New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5985929	67 (1.180)	4 (0.070)	4/250	NT	6.3%	coding (196/987 nt)	PP_5245	AraC family transcriptional regulator
	?	NC_002947	= 5985981	55 (1.010)					coding (248/987 nt)	PP_5245	AraC family transcriptional regulator

CAACGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985778‑5985929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAGGCAAGAACCG  <  NC_002947/5985981‑5985836                                                                                                                                                                                                                                                                                                             CAACGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGG                                                                                                                                                       >  5:54980/1‑149  AACGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACCGCGGCTCATGCGGCCTGAAGGTAGTG                                                                                                                                                        <  1:2976/148‑1  AACGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGAAGTGGC                                                                                                                                                      >  3:88134/1‑149    CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGGCC                                                                                                                                                     >  1:61132/1‑148    CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTG                                                                                                                                                        <  3:268778/145‑1    CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTG                                                                                                                                                        >  4:268778/1‑145                                           ATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGAGGCCTGAAGGTAGTGACCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTC                                                                                                              >  3:260725/1‑148                                                          CCGGTTCTTGCCTGCATCACGTCAATATCGTCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCTGCCTGAAGGTAGTGACCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCATGCGCCGGTCG                                                                                              <  4:260725/149‑1                                                                                CAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTAC                                                                                      >  5:269788/1‑135                                                                                CAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTAC                                                                                      <  6:269788/135‑1                                                                                                                                                     GGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAG            >  3:271119/1‑141                                                                                                                                                     GGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAG            <  4:271119/141‑1                                                                                                                                                     GGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCATCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAGGCAAGAAC    <  2:173406/149‑1                                                                                                                                                       CCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAGGCAAGAACCG  >  3:313604/1‑149                                                                                                                                                                                                                                                                                                             CAACGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTA‑CGCGGCTCATGCGGCCTGAAGGTAGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985778‑5985929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGCCACTACCTTCAGGCCGCATGAGCCGCGTACCACTGCTTGCCCCTCGGCCAAGGTCAGCAGCCGATATTGCCGTGCTGCAGGCAAGAACCG  <  NC_002947/5985981‑5985836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.