New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	550100 =	NA (NA)	3 (0.060)	3/234	NT	10.3%	coding (775/1194 nt)	tufB	elongation factor Tu‑B
	?	NC_002947	= 550096	29 (0.510)					coding (771/1194 nt)	tufB	elongation factor Tu‑B

TCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTG  >  NC_002947/549954‑550187                                                                                                                                                   |                                                                                        tCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGAGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGc                                                                                       >  7:281519/1‑149 (MQ=17)    aCCTGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTAACGGTCGTATCGAGCGTCGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCGCCACAACCTGCAcc                                                                                    >  7:230695/1‑149 (MQ=11)     ccAGCCCTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGCCAACGTTCGCGTTCAGGATCCGCAGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCg                                                                                   >  6:276160/1‑149 (MQ=255)                tGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATg                                                                        >  5:132291/1‑149 (MQ=32)                    gCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCg                                                                                   >  8:28196/1‑134 (MQ=32)                    gCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCg                                                                                   <  7:28196/134‑1 (MQ=32)                       gATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGc                                                                  >  3:312570/1‑148 (MQ=32)                                    ttCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTAACACCACCACCACCACCTGCAc                                                                                     >  3:137688/1‑116 (MQ=17)                                    ttCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTAACACCACCACCACCACCTGCAc                                                                                     <  4:137688/116‑1 (MQ=17)                                       tcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAgg                                                 >  5:231350/1‑149 (MQ=32)                                               gggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTg                                            <  6:132291/146‑1 (MQ=32)                                               gggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCt                                          <  6:210054/148‑1 (MQ=32)                                                ggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTgg                                        <  6:231350/149‑1 (MQ=32)                                                 gTCGGGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCATGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCGCCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGc                                       <  8:230695/149‑1 (MQ=12)                                                         aCCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTg                               >  8:324588/1‑149 (MQ=32)                                                             ttgttACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcggc                           >  7:293322/1‑149 (MQ=32)                                                                    cGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgc                    <  4:312570/149‑1 (MQ=32)                                                                           aTCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGATGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTgg             >  4:257160/1‑149 (MQ=17)                                                                            tCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTct                      <  5:50131/139‑1 (MQ=32)                                                                            tCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTct                      >  6:50131/1‑139 (MQ=32)                                                                               aGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTAc          >  2:66850/1‑148 (MQ=32)                                                                                gagTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCAGCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTAcc         <  8:281519/146‑1 (MQ=17)                                                                                 cGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCaa       <  7:324588/149‑1 (MQ=32)                                                                                    ggCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGc                                       >  8:126871/1‑114 (MQ=32)                                                                                     gCATCGTTCGCTGTCAGGATCCGCTGGAAATCGTTTGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGt   <  7:238330/149‑1 (MQ=12)                                                                                      cATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGt               <  2:97853/136‑1 (MQ=32)                                                                                      cATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGt               >  1:97853/1‑136 (MQ=32)                                                                                       aTCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTg  <  2:169470/148‑1 (MQ=32)                                                                                       aTCGTTCGCGTTCAGGATCCGCTGGAAATAGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTg  >  1:169470/1‑148 (MQ=17)                                                                                                                                                   |                                                                                        TCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTTCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTG  >  NC_002947/549954‑550187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.