New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652782	38 (0.670)	5 (0.100)	5/220	NT	23.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

TAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGC  >  NC_002947/652634‑652930                                                                                                                                                     |                                                                                                                                                     tAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC                                                                                                                                                      <  7:16291‑M1/149‑1 (MQ=255)    gAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGa                                                                                                                                                   <  7:200356/149‑1 (MQ=255)     aaCAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAc                                                                                                                                                  >  6:29729/1‑149 (MQ=255)      aCAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                                 <  5:29729/149‑1 (MQ=255)            tGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAAc                                                                                                                                           <  8:334592/149‑1 (MQ=255)               aaaaCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGc                                                                                                                                         <  2:10478/148‑1 (MQ=255)               aaaaCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCt                                                                                                                                        >  2:105699/1‑149 (MQ=255)                aaaCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTc                                                                                                                                       >  8:83554/1‑149 (MQ=255)                                   gACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCTGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCTCTCGATCTCAGACACTGAACGCTCGCACCGCCCGGTTCAGCt                                                                                                                     >  5:291913/1‑148 (MQ=255)                                            ggTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAg                                                                                                           >  1:325043/1‑149 (MQ=255)                                                              tGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                         <  7:83554/149‑1 (MQ=255)                                                              tGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAcc                                                                                         <  2:325043/149‑1 (MQ=255)                                                                aTAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCt                                                                                       <  1:105699/149‑1 (MQ=255)                                                                aTAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCt                                                                                       >  6:85400/1‑149 (MQ=255)                                                                    cGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGttt                                                                                   <  5:159846/149‑1 (MQ=255)                                                                      gATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                                 <  3:250753/85‑1 (MQ=255)                                                                      gATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                                 >  4:250753/1‑85 (MQ=255)                                                                          cgcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCGCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGGTTACGccc                                                                             >  2:316909/1‑149 (MQ=255)                                                                           gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggccaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctg                                                                            >  5:211083‑M1/1‑75 (MQ=255)                                                                           gcACGAATAATTGGACCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGATCACCCTGATTACGcca                                                                             >  4:135740/1‑147 (MQ=255)                                                                            cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaaatctcccggcgaacacctcccaggcgctgaacatcccccggcgaacgcctgccaggcgctg                                                                            >  7:277302‑M1/1‑74 (MQ=255)                                                                            cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCt                                                                           >  5:275923/1‑149 (MQ=255)                                                                              ggAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCg                                                                         >  1:164410/1‑149 (MQ=255)                                                                               gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGc                                                                        >  1:335707/1‑149 (MQ=255)                                                                                    atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgatgaaaagccccagtcgagcacctcccaggcccggaaaacctc                                                                    >  5:160081‑M1/1‑66 (MQ=255)                                                                                        gCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcgc                                                                <  5:85400/148‑1 (MQ=255)                                                                                        gCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATgcgc                                                                <  2:164410/148‑1 (MQ=255)                                                                                          ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatccaccggcgaacacctaccaggcgcagaaaaccacccgcca                                                              >  6:130368‑M1/1‑60 (MQ=255)                                                                                          ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTg                                                              >  8:104955/1‑148 (MQ=255)                                                                                          ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTg                                                              >  3:312220/1‑148 (MQ=255)                                                                                           ggacacaaacgttgGAGCGTGTTTACCCGCGAAGCGCCTCGCGGGCGGCGCTCTATCTCccagccgctgaaaccctcccggcgtacagctccgaggcgctgaaactcccccggcgaccacctcccaggcgctgaaaacctcccgccaaa                                                            <  5:21346‑M1/145‑91 (MQ=255)                                                                                           cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAAt                                                                    <  3:177529/141‑1 (MQ=255)                                                                                           cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAAt                                                                    >  4:177529/1‑141 (MQ=255)                                                                                              aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGTGCTGCAGGt                                                         >  7:189862/1‑149 (MQ=255)                                                                                                 aaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTg                                                       >  6:105386/1‑148 (MQ=255)                                                                                                 aaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGt                                                      >  3:260848/1‑149 (MQ=255)                                                                                                                tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                       <  4:312220/149‑1 (MQ=255)                                                                                                                 ttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCAGCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                       >  6:361339/1‑148 (MQ=255)                                                                                                                   aCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGa                                     <  6:275923/148‑1 (MQ=255)                                                                                                                    cccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAAt                                   >  7:292890/1‑149 (MQ=255)                                                                                                                     ccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc                                  >  3:270195/1‑149 (MQ=255)                                                                                                                     ccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc                                  <  4:270195/149‑1 (MQ=255)                                                                                                                         gAAGCGCCGCGCGGGCGGCGCTCGATCTCAGCCCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCCCCCAGTTCGTGAATCcgct                              >  5:41589/1‑149 (MQ=255)                                                                                                                            gcgcCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCCCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCGGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTGGTGAATCcgctcgc                           >  8:167960/1‑149 (MQ=255)                                                                                                                            gcgcCGCCCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTc                                         >  2:190986/1‑135 (MQ=255)                                                                                                                            gcgcCGCCCGCGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTc                                         <  1:190986/135‑1 (MQ=255)                                                                                                                               ccgcGCGGGCGGCGCTCGATCTCcgaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgcc                        <  8:138718‑M1/149‑127 (MQ=255)                                                                                                                                     gggcggCGCTCGATCTCAGACCGTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTctc                  <  6:291913/149‑3 (MQ=255)                                                                                                                                      ttcctttctcgatctAccaggctctgaaactctcccggcgaacacctcccaggcgctgaaaatccccgggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatac                  <  3:103956‑M1/141‑133 (MQ=255)                                                                                                                                          gcgcTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAtc             <  5:105386/149‑1 (MQ=255)                                                                                                                                             cTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCg          <  2:335707/149‑1 (MQ=255)                                                                                                                                                tatCTCcgaggcgctgaaaatctcccggcgtacacatcccagtcgctgaaaatccccgggcgaagacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatacacaccgcga         <  3:280615‑M1/146‑142 (MQ=255)                                                                                                                                                gATCTCagaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatacacaccgcga         <  3:264431‑M1/147‑142 (MQ=255)                                                                                                                                                  tctcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCAc     >  1:2227/1‑149 (MQ=255)                                                                                                                                                    tcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCAcag   >  6:162487/1‑147 (MQ=255)                                                                                                                                                    tcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTCTGGTCACGAATCTCGCTCACcg   >  2:74306/1‑149 (MQ=255)                                                                                                                                                     cAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACcgc  >  4:247990/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TAGGAACAGCATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCACCGC  >  NC_002947/652634‑652930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.