New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652782	38 (0.670)	5 (0.100)	5/220	NT	23.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

TCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAAC  >  NC_002947/4808019‑4808234                                                                                                                                             |                                                                            tCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTCTgagatc                                                                       <  3:264431‑M2/147‑7 (MQ=255) tCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTCTTCGCCCGGGGATTTTCAGCGACTGGGATGTGTACGCCGGGAGATTTTCAGCGCCTCGgagata                                                                       <  3:280615‑M2/147‑7 (MQ=255)          gtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCCGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGAGCCTGGtagatcgagaaaggaa                                                             <  3:103956‑M2/148‑17 (MQ=255)                ggCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTCGgagatcgagcgccgcccgcgcgg                                                      <  8:138718‑M2/149‑24 (MQ=255)                ggCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCCCCGGGCGAGTTTCAGCGCCTCGGAGATCTACGCGCGGAGAGTTGGAGCGGCGCGGAGATCGAGCGCCGAAcgcgcgg                                                      >  6:366837/1‑146 (MQ=21)                                                    tttGGCGGGAGGTTTTCAGCGCCTGGGAGGTGGTCGCCGGGGGAGTTTCAGCGCCTCGGAGCTGTACGCCGGGAGGGTTTCAGCGGCTGGgagatagagcgccgcccgcgaggcgcttcgcgggtaaacacgctccaacgtttgtgtcc                  <  5:21346‑M2/149‑60 (MQ=255)                                                      tGGCGGGTGGTTTTCTGCGCCTGGTAGGTGTTCGCCGGTGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgg                 >  6:130368‑M2/1‑88 (MQ=255)                                                            gAGGTTTTCCGGGCCTGGGAGGTGCTCGACTGGGGCTTTTCATCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaat           >  5:160081‑M2/1‑82 (MQ=255)                                                                    cAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTGGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgc  >  5:211083‑M2/1‑74 (MQ=255)                                                                    cAGCGCCTGGCAGGCGTTCGCCGGGGGATGTTCAGCGCCTGGGAGGTGTTCGCCGGGAGATTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctg   >  7:277302‑M2/1‑74 (MQ=255)                                                                                                                                             |                                                                            TCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAAC  >  NC_002947/4808019‑4808234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.