New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1048329	35 (0.620)	3 (0.060)	3/244	NT	7.9%	coding (49/3045 nt)	PP_0906	RND family multidrug transporter
	?	NC_002947	= 1048377	37 (0.700)					coding (1/3045 nt)	PP_0906	RND family multidrug transporter

CCTGAATGGTTTCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGC  >  NC_002947/1048197‑1048475                                                                                                                                     |                                                                                                                                                   ccTGAATGGTTTCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCAcc                                                                                                                                    >  8:273387/1‑149 (MQ=255) ccTGAATGGTTTCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCAcc                                                                                                                                    >  1:318402/1‑149 (MQ=255) ccTGAATGGTTTCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCAcc                                                                                                                                    >  5:65743/1‑149 (MQ=255)            tCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGa                                                                                                                          <  2:318402/148‑1 (MQ=255)               gCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGaa                                                                                                                      >  1:186573/1‑149 (MQ=255)                cGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAAc                                                                                                                     <  7:273387/149‑1 (MQ=255)                            ggTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAAc                                                                                                         <  3:340835/149‑1 (MQ=255)                                     tggtgACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtca                                                                                                >  3:238222‑M2/1‑145 (MQ=255)                                       gtgACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACatggcgttcaccgacacgttcatccaacgcccggtgctggccagcgtggtcagc                                                                                              >  7:197109‑M1/1‑95 (MQ=255)                                       gtgACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagc                                                                                              <  4:274128‑M2/149‑7 (MQ=255)                                         gACCGGTATCAGGGCGTTTTCCTTTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCATAATCAGCAGGCTGACatggcgttcaccgacacgttcatccaacgcccggtgctggccagcgtggtcagcct                                                                                            <  4:307236‑M1/149‑57 (MQ=255)                                          aCCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGcctc                                                                                           >  2:312577/1‑149 (MQ=255)                                            cGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACatggcgttcaccgacacgttcatccaacgcccggtgctggccagcgtggtcagcctgct                                                                                         <  8:197109‑M1/149‑60 (MQ=255)                                                aTCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACgtgt                                                                                                                 >  4:131812/1‑121 (MQ=255)                                                aTCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACgtgt                                                                                                                 <  3:131812/121‑1 (MQ=255)                                                  cAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTcc                                                                                   >  1:343283/1‑149 (MQ=255)                                                    gggCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGTAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCtt                                                                                 <  6:65743/149‑1 (MQ=255)                                                     ggCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                >  3:200272/1‑149 (MQ=255)                                                               aTTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTgcgc                                                                      >  7:303899/1‑149 (MQ=255)                                                               aTTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACAGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTgcgc                                                                      >  6:95060/1‑149 (MQ=255)                                                                      ggTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                <  1:2150/132‑1 (MQ=255)                                                                      ggTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                >  2:2150/1‑132 (MQ=255)                                                                             gCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCtt                                                         <  3:274128/148‑1 (MQ=255)                                                                               ggATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAg                                                      >  2:257370/1‑149 (MQ=255)                                                                                     gCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGAAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGtt                                                >  2:106958/1‑149 (MQ=255)                                                                                      cAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTg                                               >  2:166374/1‑149 (MQ=255)                                                                                        gCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTc                                             <  8:303899/149‑1 (MQ=255)                                                                                            gTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTgg                                         >  5:11052/1‑149 (MQ=255)                                                                                             ttCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTTGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGc                                        <  5:95060/149‑1 (MQ=255)                                                                                                 aGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTAt                                    >  8:316774/1‑149 (MQ=255)                                                                                                  ggCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATg                                   <  1:312577/149‑1 (MQ=255)                                                                                                          aGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGc                           <  7:21778/149‑1 (MQ=255)                                                                                                           gCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCg                          <  6:11052/149‑1 (MQ=255)                                                                                                             cGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCgg                         >  8:130705/1‑148 (MQ=255)                                                                                                                 cagcagAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCg                    >  8:206273/1‑149 (MQ=255)                                                                                                                      gAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt               >  7:177301/1‑149 (MQ=255)                                                                                                                      gAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt               <  1:166374/149‑1 (MQ=255)                                                                                                                       aaTCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGTGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt               >  6:313817/1‑148 (MQ=255)                                                                                                                           agcagGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacg          <  8:197109‑M2/149‑91 (MQ=255)                                                                                                                           agcagGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGt           <  2:343283/148‑1 (MQ=255)                                                                                                                              agGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattatgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaaaggaaaacgccctgataccggtc       <  4:307236‑M2/149‑94 (MQ=255)                                                                                                                              agGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGttt         >  5:188691/1‑147 (MQ=255)                                                                                                                                gCTGACatggcgttcaccgacacgttcatccaacgcccggtgctggccagcgtggtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacggtcac     <  4:274128‑M1/149‑144 (MQ=255)                                                                                                                                gCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacggtcac     >  7:197109‑M2/1‑54 (MQ=255)                                                                                                                                  tGACatggcgttcaccgacacgttcatccaacgcccggtgctggccagcgtggtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacggtcacca   >  3:238222‑M1/1‑4 (MQ=255)                                                                                                                                    aCCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGc  <  2:186573/148‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                   CCTGAATGGTTTCGGCGTTGGCCCCGGGGTAGGCGGTGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGC  >  NC_002947/1048197‑1048475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.