New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1048329	35 (0.620)	3 (0.060)	3/244	NT	7.9%	coding (49/3045 nt)	PP_0906	RND family multidrug transporter
	?	NC_002947	= 1048377	37 (0.700)					coding (1/3045 nt)	PP_0906	RND family multidrug transporter

TGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAGGCCTTCGCTGAC  >  NC_002947/1048233‑1048519                                                                                                                                                 |                                                                                                                                               tggtgACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtca                                                                                                                                            >  3:238222‑M2/1‑145 (MQ=255)   gtgACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagc                                                                                                                                          <  4:274128‑M2/149‑7 (MQ=255)      aCCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGcctc                                                                                                                                       >  2:312577/1‑149 (MQ=255)              cAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTcc                                                                                                                               >  1:343283/1‑149 (MQ=255)                gggCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGTAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCtt                                                                                                                             <  6:65743/149‑1 (MQ=255)                 ggCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                                                            >  3:200272/1‑149 (MQ=255)                           aTTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTgcgc                                                                                                                  >  7:303899/1‑149 (MQ=255)                           aTTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACAGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTgcgc                                                                                                                  >  6:95060/1‑149 (MQ=255)                                  ggTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                                                            >  2:2150/1‑132 (MQ=255)                                  ggTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTg                                                                                                                            <  1:2150/132‑1 (MQ=255)                                         gCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCtt                                                                                                     <  3:274128/148‑1 (MQ=255)                                           ggATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAg                                                                                                  >  2:257370/1‑149 (MQ=255)                                                 gCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGAAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGtt                                                                                            >  2:106958/1‑149 (MQ=255)                                                  cAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTg                                                                                           >  2:166374/1‑149 (MQ=255)                                                    gCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTc                                                                                         <  8:303899/149‑1 (MQ=255)                                                        gTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTgg                                                                                     >  5:11052/1‑149 (MQ=255)                                                         ttCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTTGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGc                                                                                    <  5:95060/149‑1 (MQ=255)                                                             aGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTAt                                                                                >  8:316774/1‑149 (MQ=255)                                                              ggCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATg                                                                               <  1:312577/149‑1 (MQ=255)                                                                      aGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGc                                                                       <  7:21778/149‑1 (MQ=255)                                                                       gCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCg                                                                      <  6:11052/149‑1 (MQ=255)                                                                         cGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCgg                                                                     >  8:130705/1‑148 (MQ=255)                                                                             cagcagAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCg                                                                >  8:206273/1‑149 (MQ=255)                                                                                  gAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt                                                           >  7:177301/1‑149 (MQ=255)                                                                                  gAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt                                                           <  1:166374/149‑1 (MQ=255)                                                                                   aaTCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGTGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGgtgt                                                           >  6:313817/1‑148 (MQ=255)                                                                                       agcagGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacg                                                      <  8:197109‑M2/149‑91 (MQ=255)                                                                                       agcagGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGt                                                       <  2:343283/148‑1 (MQ=255)                                                                                          agGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattatgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaaaggaaaacgccctgataccggtc                                                   <  4:307236‑M2/149‑94 (MQ=255)                                                                                          agGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGttt                                                     >  5:188691/1‑147 (MQ=255)                                                                                            gCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATgtcagcctgctgattctgctgctcggcttccaggcctggaacaagctgcagatccgccagtacccgcaaatggaaaacgccctgatcacggtcac                                                 >  7:197109‑M2/1‑54 (MQ=255)                                                                                                aCCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGc                                              <  2:186573/148‑1 (MQ=255)                                                                                                  cACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCcg                                           >  5:336852/1‑149 (MQ=255)                                                                                                     gCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCcggcg                                        <  7:206273/149‑1 (MQ=255)                                                                                                         gCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGa                                    >  6:362408/1‑149 (MQ=255)                                                                                                          ccAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGTGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGac                                   <  5:313817/149‑1 (MQ=255)                                                                                                           cAGCACCGGGCGTTGGATGAACGTATCGGTGAACGCCATGTCAGCCTCCAGAGTCCTTGGACGCTGCGCCCGGTTCCGCCTTGAGGGCGTTGTACTGGCCTATGCGTATTGCGGCACCGGGTCTGAGTTTCAGCTGCCCGGCGGTGac                                   >  2:159144/1‑148 (MQ=255)                                                                                                                               aCGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAg              <  7:316774/149‑1 (MQ=255)                                                                                                                               aCGTGTCGGTGAACGCCAGGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAg              <  6:336852/149‑1 (MQ=255)                                                                                                                                  tgtCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGCCCACCTGTTCCCCGGCCTGCAGGcc           >  7:146749/1‑149 (MQ=255)                                                                                                                                          aaCGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGTACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAGGCCTTCGCTg    <  1:106958/148‑1 (MQ=255)                                                                                                                                          aaCGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAGGCCTTCGCTg    >  3:109477/1‑148 (MQ=255)                                                                                                                                           aCGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAGGCCTTCGCTGAc  >  5:154899/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                               TGGTGACCGTGATCAGGGCGTTTTCCATTTGCGGGTACTGGCGGATCTGCAGCTTGTTCCAGGCCTGGAAGCCGAGCAGCAGAATCAGCAGGCTGACCACGCTGGCCAGCACCGGGCGTTGGATGAACGTGTCGGTGAACGCCATGTCAGCCTCCTGAGTCCTTGGCCGCTGCGCCCGGTTCGGGCTTGAGGGCGTTGTCCTGGCCTATGCGTATTGCGGCACCGGGTGTGAGTTTCAGCTGCCCGGCGGTGACCACCTGTTCCCCGGCCTGCAGGCCTTCGCTGAC  >  NC_002947/1048233‑1048519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.