| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 28 (0.490) | 12 (0.230) | 9/236 | NT | 21.7% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 6060505 | 61 (1.190) | intergenic (+141/+40) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑CG‑GCTTTGCCGGTGT‑T‑TCGGG‑CA‑C‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499361‑1499654 | gCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCATGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCGCGGAGCATGGCAC‑CG‑CCTTTGCCCGAGT‑TCGCGGG‑CC‑c‑g‑cc > 7:169549/1‑149 (MQ=25) cattaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgccc < 4:321511‑M1/2‑1 (MQ=255) aagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCt > 8:186440‑M1/144‑148 (MQ=255) gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACACGCGCCGCGGTGCATGGCAC‑CC‑GCATTGCCGGTGT‑TCGCGGG‑CACC‑C‑CCGCACCcacaaa > 1:25577/1‑147 (MQ=21) agcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTcc < 8:21064‑M1/7‑1 (MQ=255) aTGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTACCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGAc < 1:300308/149‑1 (MQ=21) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGCTCCca < 5:330388‑M1/9‑1 (MQ=255) cATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGc > 2:57712/1‑149 (MQ=21) agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCAtt > 2:44506/1‑148 (MQ=21) gagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGGAACAGGCGCCGCGGGGCATGGCAC‑CG‑GCGTTGCCGGTGT‑TAGCGGG‑CC‑CGG‑CCGCGCCCACAGACTGATTGCCAtt > 6:263940/1‑147 (MQ=255) tGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGGCCGCGAAACACGCGCCCCGGTGGCTGGCAC‑CC‑GCATTGCCGGTGT‑TAGCGGGCCC‑C‑C‑CCGCGCCCACCGACTGAAGGCCAATAAGCcgg > 6:69748/1‑149 (MQ=255) aactatgCCTGGGCACCACTGCTGGCGTGAGGCTGCCAATGGGTGGGAGGGGGCGGGCCCGCTAAACAGGCGCCGGGGTGCATGGCAC‑GG‑GCTTTGCGGGTGT‑TCGGGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 2:25577/142‑1 (MQ=255) aaCGAAGCCTTGGCACCACAACAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 7:112072/148‑1 (MQ=21) ttGGCACCACCGCAGGACTGAGGCTGCCAAACGGTGGGCGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGa < 1:320691/119‑1 (MQ=17) cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttttt < 3:225773/149‑1 (MQ=21) cggcggcCATCCGGGGGGCGGGGGCGGGCCCGCGAAAGAGGCGCCGCGGTGC‑TGGCCACCG‑GCTTGGCCGGTGTGC‑GCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt < 5:210750/148‑1 (MQ=21) cggCTGCCAACCGGTGGGAGCGGGCGGCCCCGCGAAACCGGCGCCGCGGTCCAT‑GCCA‑CGTGCTTTGCGGGTGTGC‑GCGGG‑AA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt < 5:205652/148‑1 (MQ=255) gTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt < 5:98567/136‑1 (MQ=21) ggAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 1:57712/149‑1 (MQ=25) gggCGTGCCCGCGAAACAGGCGCGGCTGTGCATGGGAC‑GG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTGGCTAACGAATCATGa < 8:169549/149‑1 (MQ=25) gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 1:44506/149‑1 (MQ=37) cccGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 6:343045/1‑148 (MQ=37) ccGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 7:190422/141‑1 (MQ=25) ccGCGAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa > 8:190422/1‑141 (MQ=25) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa < 8:118803/134‑1 (MQ=25) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa > 7:118803/1‑134 (MQ=25) cgcgAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 7:98768/1‑146 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg > 7:91456/1‑148 (MQ=37) gcccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 2:7794‑M1/90‑1 (MQ=255) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 8:62145‑M1/90‑1 (MQ=255) gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg < 2:313147‑M1/93‑1 (MQ=255) gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCGCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTACCGAGTCATGCCTCCCTTAg < 7:134631‑M1/93‑1 (MQ=255) aGGCGCCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa > 8:186012/1‑148 (MQ=37) gcgcCGCGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTATAAAGCTAta > 8:258810/1‑147 (MQ=37) cgccgcGGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCaa < 8:98768/149‑1 (MQ=37) cgcgGTGCATGGCAC‑CG‑GCTTTGCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 6:91514/1‑147 (MQ=37) ccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt > 1:313147‑M1/49‑149 (MQ=255) aaagccggtgccatgcaccgcggcgccggtgttcgcgggcacgcCCGCTCCCACAGAATGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGATTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg < 5:122976‑M1/105‑1 (MQ=255) aaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGc > 7:62145‑M1/44‑149 (MQ=255) cggcaaagCCGGTGT‑TCGCGGG‑CA‑C‑GCCCGCTCCCACAGACAGCTTGCCATTAAGCGGGCCTCTCGCTACAGTGACGGCCCGGTGTTTGTTGCCTCGCTAACGAATAATGCCTCCCGTAGAACGCTATCAAGCAGATCTGAAACCTccc > 1:307600/8‑149 (MQ=255) ggtgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTcc > 5:343045‑M1/18‑149 (MQ=255) ggtgttcgcgggcacgcCCGCGCCCACAGCCTGATTGCCCTTAAGCCGGCCGATCGCGACAGTGCCGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCGATCAAGCAGATCTGAAACGTCCCGACTTCTTcc > 2:307600‑M1/18‑149 (MQ=255) cgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAGCGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGAc > 1:7794‑M1/12‑148 (MQ=255) cgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGAcg < 6:220520‑M1/138‑1 (MQ=255) gcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACgcggcg < 5:40953‑M1/143‑1 (MQ=255) cacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt < 7:317298‑M1/101‑1 (MQ=255) cacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt > 8:317298‑M1/6‑106 (MQ=255) cacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGgcgc > 6:40953‑M1/6‑149 (MQ=255) CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGa < 6:231287‑M1/148‑1 (MQ=255) | GCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCA‑CG‑GCTTTGCCGGTGT‑T‑TCGGG‑CA‑C‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499361‑1499654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |