New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	28 (0.490)	6 (0.140)	5/204	NT	17.7%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	34 (0.770)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

GGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGC  >  NC_002947/1731015‑1731310                                                                                                                                                     |                                                                                                                                                    gggTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACgg                                                                                                                                                     >  8:160769/1‑149 (MQ=255)   atgcgcttctgggtggcgatgttgctggtgcagtcgttgccttatgtggaagcgctggtgatggcgttcctgtcgtcgcagcccaagcccgcagaaaacgctgcccaagcgcagcaggcttgaacttgcctgggccgacctgtgcaGcc                                                                                                                                                   <  5:16243‑M1/3‑1 (MQ=255)        cttctgggtggcgttgttgctggtgcagtcgttgccttatgtggcagctctggtgatggcgttcctgtcgtcgctgccgaagcccgcagaataggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaTCCCATTc                                                                                                                                              >  6:16243‑M1/142‑149 (MQ=255)         ttctgggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTcg                                                                                                                                             <  5:347282‑M1/9‑1 (MQ=255)                   cgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgattgcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGcc                                                                                                                                   >  6:336778‑M1/131‑149 (MQ=255)                    gatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcgGCCCATTCGCGGGCACGccc                                                                                                                                  <  8:329256‑M1/20‑1 (MQ=255)                            ccctggCCAGGTGACGGGTTGGCGAGCCGGCGGCAGGGGCCGTAATGGGGGCCTCGGGGGCAAGGAAAGGCGGGGAAATGTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGACACGCCCGCTCCcac                                                                                                                          <  6:66742/145‑1 (MQ=255)                              gtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAg                                                                                                                        <  5:262145‑M1/30‑1 (MQ=255)                              cAGGCAATTTGAAGGGTCGGCGAGAGGTGGGCTGGGCGGGTAATGGGGGACTCCGGGGCAAGGCAAGGCGTGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAg                                                                                                                        <  5:252262/149‑1 (MQ=255)                                        gAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGcccc                                                                                                              >  4:33315/1‑146 (MQ=255)                                        gAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCCCTCCCCCAGGTACTGcc                                                                                                                >  6:190086/1‑146 (MQ=255)                                            ggTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACACGTACTGCACAGctc                                                                                                          >  3:346628/1‑149 (MQ=255)                                                       gcggggCTGGGGCCGTATTGGGGCACCCCGGGCAACGGCAAGGCGGGCAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtgt                                                                                               <  1:197839/145‑1 (MQ=38)                                                        cTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtgtg                                                                                              >  4:42617/1‑149 (MQ=255)                                                              aGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGc                                                                                        >  2:347696/1‑149 (MQ=255)                                                                    cGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTgg                                                                                  <  3:42617/149‑1 (MQ=255)                                                                          gggggACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg                                                                            >  7:259609/1‑149 (MQ=255)                                                                            cgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcgGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGc                                                                          >  7:329256‑M1/74‑149 (MQ=255)                                                                            cgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGc                                                                          >  6:262145‑M1/74‑149 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCa                                                                                                                                                 >  4:4085/1‑73 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCa                                                                                                                                                 <  3:4085/73‑1 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTg                                                                                   >  8:190402/1‑135 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTg                                                                                   <  7:190402/135‑1 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg                                                                            >  7:264912/1‑142 (MQ=255)                                                                                 tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg                                                                            <  8:264912/142‑1 (MQ=255)                                                                                 ctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCggg                                                                           >  3:326312‑M1/69‑143 (MQ=255)                                                                                 ctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCggg                                                                           <  4:326312‑M1/75‑1 (MQ=255)                                                                                    ggggCAAGGCAAGGCGGGCAAATCTGAGGGGCGTTATCTTATAACAAATGGTTTCGGGCAGCACGGCCGATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTGTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcgc                                                                  <  4:229684/149‑1 (MQ=255)                                                                                      ggcaaggcaaGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcgcg                                                                 >  2:291488/1‑148 (MQ=255)                                                                                         gcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCg                                                                         >  4:284782‑M1/61‑137 (MQ=255)                                                                                         gcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCg                                                                         <  3:284782‑M1/77‑1 (MQ=255)                                                                                                 gcGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGc                                                                                                                 >  6:93303/1‑89 (MQ=255)                                                                                                 gcGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGc                                                                                                                 <  5:93303/89‑1 (MQ=255)                                                                                                     ggAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGTACTGCACAGCTCTGACCGCCTGAGCCAAGCCGGTGGGCGCCGGCGTGCCCCCGAATCGGCTGCACAGGt                                                 >  8:264875/1‑149 (MQ=39)                                                                                                            tctggggCGTTAGCTTATATCAAAGGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTCAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCa                                          <  6:7136/146‑1 (MQ=255)                                                                                                              aGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTCCTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAgg                                        <  7:160769/149‑1 (MQ=255)                                                                                                                     ttATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACtt                                  >  5:280029/1‑148 (MQ=255)                                                                                                                        tCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa                               <  1:347696/148‑1 (MQ=255)                                                                                                                           tataTCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGCGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCgg                                              >  8:261583/1‑130 (MQ=255)                                                                                                                              atCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACCCCCCCTCCCACAGGTACTTCCCAGCGGGGAACGCCTGGGGCAAGGCGGGGGGGGCGGGCGTGGCCGGGGATGGGCGGGCCAGGTCGGCCCAGGCCACTTGCAGCctgct                        >  6:244108/1‑149 (MQ=255)                                                                                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGGACGCCTGTGGCCAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCCGGCAACGTCAAGCCTGCTGCGCTTggg               >  1:336007/1‑149 (MQ=38)                                                                                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCGCAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTggg               >  2:212202/1‑149 (MQ=255)                                                                                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTggg               >  3:203420/1‑149 (MQ=255)                                                                                                                                                    ggCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGc  >  8:150342/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGC  >  NC_002947/1731015‑1731310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.