New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	28 (0.490)	6 (0.140)	5/204	NT	17.7%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	34 (0.770)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

GGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAT  >  NC_002947/1731115‑1731400                                                                                                                                             |                                                                                                                                                  ggAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGTACTGCACAGCTCTGACCGCCTGAGCCAAGCCGGTGGGCGCCGGCGTGCCCCCGAATCGGCTGCACAGGt                                                                                                                                           >  8:264875/1‑149 (MQ=39)        tctggggCGTTAGCTTATATCAAAGGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTCAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCa                                                                                                                                    <  6:7136/146‑1 (MQ=255)          aGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTCCTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAgg                                                                                                                                  <  7:160769/149‑1 (MQ=255)                 ttATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACtt                                                                                                                            >  5:280029/1‑148 (MQ=255)                    tCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa                                                                                                                         <  1:347696/148‑1 (MQ=255)                       tataTCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGCGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCgg                                                                                                                                        >  8:261583/1‑130 (MQ=255)                          atCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACCCCCCCTCCCACAGGTACTTCCCAGCGGGGAACGCCTGGGGCAAGGCGGGGGGGGCGGGCGTGGCCGGGGATGGGCGGGCCAGGTCGGCCCAGGCCACTTGCAGCctgct                                                                                                                  >  6:244108/1‑149 (MQ=255)                                   tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGGACGCCTGTGGCCAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCCGGCAACGTCAAGCCTGCTGCGCTTggg                                                                                                         >  1:336007/1‑149 (MQ=38)                                   tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCGCAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTggg                                                                                                         >  2:212202/1‑149 (MQ=255)                                   tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTggg                                                                                                         >  3:203420/1‑149 (MQ=255)                                                ggCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGc                                                                                            >  8:150342/1‑149 (MQ=255)                                                  CCCATTCGCGGGCACGCCCGCTCCCACAGGTACTCCACAGCTCTGAACGCCTGGGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCgg                                                                                          >  5:190086‑M1/1‑149 (MQ=255)                                                  CCCATCCGCGGGCACGCCCGCCCCCACCGGTCCTCCACAGCTCTGAACGCCGGGGCCAAGCCGGGGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCgg                                                                                          >  3:33315‑M1/1‑149 (MQ=255)                                                             gCACGCCCGCTCCCACCCGCGTGGCCCAGGGCAGAACGCCGGTGCCAACCCCGTGGGAGCGGGCGTGCCCGCGAATTGGCAGCACAGGTCGGCCCAGGGAACATCAACCCAGCTGCGCGTGGGCAGCCTTTTATTAGGGCGTGGGCAGc                                                                               >  4:46970/1‑149 (MQ=255)                                                                cgcccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGc                                                                                        <  3:284782‑M2/60‑1 (MQ=255)                                                                cgcccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGc                                                                                        >  4:284782‑M2/78‑137 (MQ=255)                                                                CGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCGCAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgac                                                                            >  1:212202‑M1/1‑149 (MQ=255)                                                                 gcccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacg                                                                           >  6:262145‑M2/77‑149 (MQ=255)                                                                 gcccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacg                                                                           >  7:329256‑M2/77‑149 (MQ=255)                                                                  cccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAg                                                                                >  3:326312‑M2/76‑143 (MQ=255)                                                                  cccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAg                                                                                <  4:326312‑M2/68‑1 (MQ=255)                                                                         CCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGaa                                                                    >  1:291488‑M1/1‑148 (MQ=255)                                                                         CCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAAc                                                                   >  6:280029‑M1/1‑149 (MQ=255)                                                                          CACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCtttt                                                                                                <  3:271017‑M1/119‑1 (MQ=255)                                                                          CACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCtttt                                                                                                >  4:271017‑M1/1‑119 (MQ=255)                                                                          CACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACg                                                                  <  8:50045‑M1/149‑1 (MQ=255)                                                                             aGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa                                                                                                                         >  1:217430/1‑91 (MQ=255)                                                                             aGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa                                                                                                                         <  2:217430/91‑1 (MQ=255)                                                                                   tGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCa                                                         >  6:347282/1‑149 (MQ=255)                                                                                    gCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGACGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAg                                                        >  2:284883/1‑149 (MQ=255)                                                                                     cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTg                                                                                             <  4:70198/111‑1 (MQ=255)                                                                                     cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTg                                                                                             >  1:9700/1‑111 (MQ=255)                                                                                     cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTg                                                                                             <  2:9700/111‑1 (MQ=255)                                                                                     cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTg                                                                                             >  3:70198/1‑111 (MQ=255)                                                                                     cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAgc                                                       >  3:7304/1‑149 (MQ=255)                                                                                            ctGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCca                                                <  7:150342/149‑1 (MQ=255)                                                                                            cggaccGCCTGGGCCAAGCCGGGGGGAGCGGGGGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCca                                                <  5:244108/144‑1 (MQ=255)                                                                                                 cGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATaa                                           <  4:7304/149‑1 (MQ=255)                                                                                                    cTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCct                                                                                                                     <  6:17614/72‑1 (MQ=255)                                                                                                    cTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCct                                                                                                                     >  5:17614/1‑72 (MQ=255)                                                                                                      gtgCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc                                                           >  1:157490/1‑128 (MQ=255)                                                                                                      gtgCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc                                                           <  2:157490/128‑1 (MQ=255)                                                                                                        gCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTgg                                                                                    >  2:148286/1‑101 (MQ=255)                                                                                                        gCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTgg                                                                                    <  1:148286/101‑1 (MQ=255)                                                                                                          cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCTACATAAGGCAACGa                                   >  2:256427/1‑148 (MQ=255)                                                                                                          cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa                                      >  7:275823/1‑145 (MQ=255)                                                                                                          cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa                                      <  8:275823/145‑1 (MQ=255)                                                                                                          cAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGAc                                  <  7:120398/149‑1 (MQ=255)                                                                                                               ctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAc                             <  5:262145‑M2/119‑1 (MQ=255)                                                                                                               cGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAc                             <  4:203420/149‑1 (MQ=255)                                                                                                                         gggcgtgcccgcgaatgggcCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATc                   <  8:329256‑M2/129‑1 (MQ=255)                                                                                                                          ggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCAATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCg                  >  6:336778‑M2/20‑149 (MQ=255)                                                                                                                                    cgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGaa        <  5:347282‑M2/140‑1 (MQ=255)                                                                                                                                     gaatgggaTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTATTCTGCGGGCTTCGGCAGCGACGACAGGAACGCCATCACCAGAGCTGCCACATAAGGCAACGACTGCACCAGCAACAACGCCACCCAGAAg       >  6:16243‑M2/9‑149 (MQ=255)                                                                                                                                          ggcTGCACAGGTCGGCCCAGGCAAGTTCAAGCCTGCTGCGCTTGGGCAGCGTTTTCTGCGGGCTTGGGCTGCGACGACAGGAACGCCATCACCAGCGCTTCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAt  <  5:16243‑M2/146‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  GGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAT  >  NC_002947/1731115‑1731400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.