New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1906682 =	31 (0.550)	8 (0.180)	6/208	NT	25.1%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906776 =	23 (0.510)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

GCAGCGCCGCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAAC  >  NC_002947/1906535‑1906824                                                                                                                                                     |                                                                                                                                               cgagcgcgaagatgtagtcctgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctg                                                                                                                                                <  6:242377‑M1/1‑1 (MQ=255)  gagcgcgaagatgtagtcctgcaaccgcatcgcgccagtgacactgtacagacacgcacgcgcatgggcgagatggtggtggacagcctggtggatgtgtttgacgggcgcacgccgcaggggttggttatctagtcggcttgtgatgg                                                                                                                                               <  1:61102‑M1/2‑1 (MQ=255)       cgaagttgttggcctgcaaccgcatcgcgccagtgccactgtacagagacgctcgcgcatgggcgagatggtggtggccagcctggtggatgggtttgccgggcgcacgccgcaggtgttggttatctagtgggcttgtgctGGCctct                                                                                                                                          >  5:110862‑M1/143‑149 (MQ=255)        gaagatgtagtcctgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatcttgtcggcttgtgctGGCGTCtt                                                                                                                                         <  5:214381‑M1/8‑1 (MQ=255)        gaagatgtagtcctgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttagctagtcggcttgtgctGGCCTCtt                                                                                                                                         <  5:209336‑M1/8‑1 (MQ=255)        cgcTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTc                                                                                                                                        <  4:90250/149‑1 (MQ=255)               cAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                                    <  3:311302/146‑1 (MQ=255)               cAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGc                                                                                                                                  >  6:139483/1‑148 (MQ=255)                  gcagcaCTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGc                                                                                                                              <  3:185359/149‑1 (MQ=255)                     tgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGccc                                                                                                                            <  6:92325‑M1/21‑1 (MQ=255)                     tgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGccc                                                                                                                            <  3:148153‑M1/21‑1 (MQ=255)                     tgcaaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGccc                                                                                                                            <  6:240789‑M1/21‑1 (MQ=255)                      caCTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGc                                                                                                                                              >  4:198569/1‑129 (MQ=255)                      caCTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGc                                                                                                                                              <  3:198569/129‑1 (MQ=255)                      caCTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGc                                                                                                                          >  2:220079/1‑149 (MQ=255)                        cTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCGCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTc                                                                                                                        <  6:214060/149‑1 (MQ=255)                        aaccgcatcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCt                                                                                                                         <  7:24452‑M1/24‑1 (MQ=255)                            ggCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTAc                                                                                                                    >  3:206035/2‑149 (MQ=255)                             catcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCgg                                                                                                                                    >  1:94846‑M1/121‑133 (MQ=255)                             catcgcgccagtgccactgtacagacacgcacgcgcatgggcgagatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCgg                                                                                                                                    <  2:94846‑M1/13‑1 (MQ=255)                               ctgctgAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAAGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGTCGGCCTCTTCGCGGGCAAGCCCGCTCCTACgg                                                                                                                  >  4:355171/1‑148 (MQ=255)                                  ctgAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGATGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCCCTCAAACGGaa                                                                                                                >  1:262650/1‑148 (MQ=255)                                         gggAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCCAGCCCGCTCCTCCGGTATCTTCCCCg                                                                                                       >  4:45998/1‑149 (MQ=255)                                           gAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCt                                                                                                             >  5:37983/1‑141 (MQ=255)                                           gAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCt                                                                                                             <  6:37983/141‑1 (MQ=255)                                           gAGTGTCTGGAGGATGCCGGGCAGAAGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGTCCTGATACCCCTTTGCTGCCTGTGTCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGcc                                                                                                     <  3:355171/149‑1 (MQ=255)                                                  tGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTGCGAAGGAAACTGCACCGCCGTGTaa                                                                                               >  4:148153/1‑148 (MQ=255)                                                       gaTGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACgg                                                                                          <  4:206035/148‑1 (MQ=255)                                                         gcacgcgcatgggcgatatggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGgcg                                                                                        <  6:149557‑M1/57‑1 (MQ=255)                                                          gCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGcc                                                                                      >  8:195916/1‑149 (MQ=255)                                                                    ggTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTgg                                                                            <  1:220079/149‑1 (MQ=255)                                                                         cGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCg                                                                       <  7:195916/149‑1 (MQ=255)                                                                         cGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCg                                                                       <  2:262650/149‑1 (MQ=255)                                                                          gggTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCgg                                                                      >  2:29598/1‑149 (MQ=255)                                                                           tggtggtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCgg                                                                      >  5:149557‑M1/75‑149 (MQ=255)                                                                           ggTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCggg                                                                     <  6:5965/149‑1 (MQ=255)                                                                            ggtggtggccagcctggtggatgtgtttgccggtcgcacgcctcaggggtttgttatctagtcggctttttctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGagctg                                                                      >  2:61102‑M1/74‑146 (MQ=255)                                                                                gtggccagcctggtggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTg                                                                 >  8:23527‑M1/70‑149 (MQ=255)                                                                                   ccGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTTTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGccc                                                              <  8:257379/149‑1 (MQ=255)                                                                                        gCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGa                                                                          <  4:46380/132‑1 (MQ=255)                                                                                        gCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGa                                                                          >  3:46380/1‑132 (MQ=255)                                                                                              ggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCggg                                                                     >  8:140790‑M1/56‑131 (MQ=255)                                                                                              ggatgtgtttgccgggcgcacgccgcaggggttggttatctagtcggcttgtgctGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCggg                                                                     <  7:140790‑M1/76‑1 (MQ=255)                                                                                                   gggAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGgcg                                                                                        >  1:20333/1‑107 (MQ=255)                                                                                                   gggAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGgcg                                                                                        <  2:20333/107‑1 (MQ=255)                                                                                                                cacgccgcaggggttggttatctagtcggcttgtgccGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGcgggt                                                                    >  2:132802‑M1/38‑113 (MQ=255)                                                                                                                cacgccgcaggggttggttatctagtcggcttgtgccGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGcgggt                                                                    <  1:132802‑M1/77‑2 (MQ=255)                                                                                                                    gCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaac                              >  7:263838/1‑148 (MQ=255)                                                                                                                    gCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGACAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaa                               <  7:237177/147‑1 (MQ=255)                                                                                                                      ggTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGATGAGGCCAGCACAAGCCGACTAGATaaccaa                           <  1:29598/149‑1 (MQ=255)                                                                                                                              gATCCCCCTTGGCTGCCTGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCTACGGAAGCTCCACCGCCTTGTAATACGGCGCCGACCCGGGGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgcg                   <  8:214290/149‑1 (MQ=38)                                                                                                                                  ccccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt               <  8:263838/149‑1 (MQ=255)                                                                                                                                                 tgCCGGCCGCTTCGCGGGCAACCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAac  <  3:45998/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCAGCGCCGCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTG‑TGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAAC  >  NC_002947/1906535‑1906824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.