New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1906682 =	31 (0.550)	8 (0.180)	6/208	NT	25.1%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906776 =	23 (0.510)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

GCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCG  >  NC_002947/1906649‑1906923                                                                                                                                |                                                                                                                                                    gCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaac                                                                                                                                 >  7:263838/1‑148 (MQ=255) gCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGACAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaa                                                                                                                                  <  7:237177/147‑1 (MQ=255)   ggTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGATGAGGCCAGCACAAGCCGACTAGATaaccaa                                                                                                                              <  1:29598/149‑1 (MQ=255)           gATCCCCCTTGGCTGCCTGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCTACGGAAGCTCCACCGCCTTGTAATACGGCGCCGACCCGGGGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgcg                                                                                                                      <  8:214290/149‑1 (MQ=38)               ccccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGt                                                                                                                  <  8:263838/149‑1 (MQ=255)                              tgCCGGCCGCTTCGCGGGCAACCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAac                                                                                                     <  3:45998/147‑1 (MQ=255)                                           GCGGGCAAGCCCACTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTg                                                                                      >  5:139483‑M1/1‑149 (MQ=255)                                                caagcccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccac                                                                                 >  8:23527‑M2/81‑149 (MQ=255)                                                   acccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTg                                                                                                                 >  2:132802‑M2/78‑114 (MQ=255)                                                   acccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTg                                                                                                                 <  1:132802‑M2/37‑1 (MQ=255)                                                   GCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccac                                                                              <  4:44921‑M1/149‑1 (MQ=255)                                                    cccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATcc                                                                                               >  8:140790‑M2/77‑131 (MQ=255)                                                    cccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATcc                                                                                               <  7:140790‑M2/55‑1 (MQ=255)                                                     ccgctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacca                                                                            >  5:149557‑M2/76‑149 (MQ=255)                                                     cagctcccacagggtcggcgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGAAAAAGCCGACTAGATAACAAACCCCTGAGGCGTGCGACCGGCAAACACATCCACCAGGCTGGccaccacc                                                                             >  2:61102‑M2/76‑148 (MQ=255)                                                     CCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGccaccacca                                                                            <  8:181584‑M1/149‑1 (MQ=255)                                                                      gCACCGCCTTGTAATACGGCGCCGACCCTGTGTGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtg                                                           >  5:240789/1‑149 (MQ=255)                                                                       cgccgtattacaaggcggtgcagattccgtaggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATATCGCCCATGCgcgtgc                                                          <  6:149557‑M2/92‑1 (MQ=255)                                                                       cACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGcgcg                                                             <  3:44921/146‑1 (MQ=255)                                                                        aCCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgcg                                                         >  3:355029/1‑149 (MQ=255)                                                                          cGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGcgtgcgtg                                                       >  2:127219/1‑149 (MQ=255)                                                                           gCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCgtgt                                                      <  4:355029/149‑1 (MQ=255)                                                                                 tAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTa                                                 >  1:352311/1‑148 (MQ=255)                                                                                  aaTACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACACGCCGACTAGATACCCAACCCCTGCGGCGTGCGCCCGGCAAACACCTCCACCAGGCTGGCCACCACCATCTCGCCCATGAGCGTGCGTGTCGGTAcc                                               >  6:209336/1‑148 (MQ=39)                                                                                  aaTACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCACACACATCCCCCAGGCTGGCCCCCACCCTCACGCCCAGTCGCGTGCGTGTCTGTa                                                 >  6:214381/1‑147 (MQ=38)                                                                                         cgcCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTg                                                   <  2:317902/138‑1 (MQ=255)                                                                                         cgcCGACCATGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTg                                                   >  1:317902/1‑138 (MQ=255)                                                                                          gcCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgc                                                          <  6:342364/130‑1 (MQ=255)                                                                                          gcCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCgcgtgc                                                          >  5:342364/1‑130 (MQ=255)                                                                                          gcCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACt                                       <  2:352311/149‑1 (MQ=255)                                                                                               cccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc                                  >  7:283676/1‑149 (MQ=255)                                                                                               cccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc                                  <  8:283676/149‑1 (MQ=255)                                                                                                ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc                                  >  5:92325/1‑148 (MQ=255)                                                                                                ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGgcgc                                  >  5:242377/1‑148 (MQ=255)                                                                                                  tgtgGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGAt                               >  2:3834/1‑149 (MQ=255)                                                                                                        agcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGtt                         <  7:24452‑M2/125‑1 (MQ=255)                                                                                                           gggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCa                      <  6:240789‑M2/128‑1 (MQ=255)                                                                                                           gggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCa                      <  6:92325‑M2/128‑1 (MQ=255)                                                                                                           gggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCa                      <  3:148153‑M2/128‑1 (MQ=255)                                                                                                                   ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATg                              <  2:94846‑M2/120‑1 (MQ=255)                                                                                                                   ccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATg                              >  1:94846‑M2/14‑133 (MQ=255)                                                                                                                        aagaggccAGCACAAGCCGACTAGCTAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc         <  5:209336‑M2/141‑1 (MQ=255)                                                                                                                        aagacgccAGCACAAGCCGACAAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTc         <  5:214381‑M2/141‑1 (MQ=255)                                                                                                                         agaggccAGCACAAGCCCACTAGATAACCAACACCTGCGGCGTGCGCCCGGCAAACCCATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGAGCGTCTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGCCAACAACTTcg        >  5:110862‑M2/8‑149 (MQ=255)                                                                                                                              ccATCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGTCAAACACATCCACCAGGCTGTCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGTCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTc   <  1:61102‑M2/147‑1 (MQ=255)                                                                                                                               cAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCg  <  6:242377‑M2/148‑1 (MQ=255)                                                                                                                                |                                                                                                                                                    GCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGCGCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCG  >  NC_002947/1906649‑1906923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.