New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2138293 =	40 (0.710)	4 (0.070)	4/252	NT	7.9%	coding (396/933 nt)	yadG	ABC transporter ATP‑binding protein
	?	NC_002947	2138370 =	55 (1.000)					coding (473/933 nt)	yadG	ABC transporter ATP‑binding protein

GCCGCAAGAGTTCAACTTCAACCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTCACTGAG  >  NC_002947/2138146‑2138440                                                                                                                                                    |                                                                                                                                                    gCCGCAAGAGTTCAACTTCAACCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGAtgtg                                                                                                                                                     >  2:20009/1‑148 (MQ=255)    gCAAGAGTTCAACTTCAACCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGt                                                                                                                                                 >  2:29714/1‑149 (MQ=255)          ggcacagctgctcagcctcttccagatagtgggtggtgaggatgatggtgatgcccttctggttcagctcagtgaggaagctccacatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcaGCAGTCGcgtt                                                                                                                                           <  2:204234‑M1/11‑1 (MQ=255)          gTTCAACTTCAACCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGcgtt                                                                                                                                           >  4:180114/1‑149 (MQ=255)           ttcaacttaaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAACTGGGCCTGTGGGACAAACGTGATGTGCAGTCGcgtta                                                                                                                                          >  7:216686/1‑148 (MQ=255)            tcaacttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGCACAAACGTGATGTGCAGTCGcgttc                                                                                                                                          <  2:286825/148‑1 (MQ=255)            tcaacttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGCACAAACGTGATGTGCAGTCGcgttc                                                                                                                                          >  1:286825/1‑148 (MQ=255)             acagctgctcagcctcttccagatagtgggtggtgaggatgatggtgatgcccttctggttcagctcagtgaggaagctccacatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcagc                                                                                                                                                    <  3:289577‑M1/2‑1 (MQ=255)             acagctgctcagcctcttccagatagtgggtggtgaggatgatggtgatgcccttctggttcagctcagtgaggaagctccacatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcagc                                                                                                                                                    >  4:289577‑M1/136‑137 (MQ=255)              aacttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGcgttcgtt                                                                                                                                       >  7:330715/1‑149 (MQ=255)                cttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACCAACGTGATGTGCAGTCGCGTTCGTTGt                                                                                                                                     >  2:260677/1‑149 (MQ=255)                cttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGt                                                                                                                                     >  1:59967/1‑149 (MQ=255)                 ttcaacCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTc                                                                                                                                    >  2:266103/1‑149 (MQ=255)                     acCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCcggc                                                                                                                                <  4:282924/149‑1 (MQ=255)                           tCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCAt                                                                                                                           >  3:10394/1‑148 (MQ=255)                             gAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGaa                                                                                                                        <  7:130314/149‑1 (MQ=255)                                    ccTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGgcgc                                                                                                                 <  3:180114/149‑1 (MQ=255)                                     cTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGcc                                                                                                                >  2:119006/1‑149 (MQ=255)                                     cTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGcc                                                                                                                >  6:160330/1‑149 (MQ=255)                                             tcgtcgTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGAtt                                                                                                        <  6:145170/149‑1 (MQ=255)                                                  gtGACCCTGGCCGGGTACTTGGGCATCCCGCCCAAGCTGGCCATGGAGCGCGCCGAGCAGTACCTGAGTCAGCTGGGCCTGTGGGACTAACGTGATGTGCTTTCGCGTTCGTTGTCCGGCGGCATGATGCGGCGCCTGATGATTGCCcg                                                                                                   <  1:260677/149‑1 (MQ=255)                                                  gtGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGccc                                                                                                    <  2:64540/148‑1 (MQ=255)                                                            ccGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATc                                                                                         <  2:59967/149‑1 (MQ=255)                                                             cGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATcc                                                                                        <  5:160330/149‑1 (MQ=255)                                                                   ctacGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAAc                                                                                  <  6:233860/149‑1 (MQ=255)                                                                    tacGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAAcc                                                                                 >  6:303415/1‑149 (MQ=255)                                                                         cATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGcc                                                                            >  6:294507/1‑149 (MQ=255)                                                                           agctcagtgaggaagctccacatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcaGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTCCCCGCGCATTGATCCACGAACCGCGCct                                                                           >  1:204234‑M1/74‑148 (MQ=255)                                                                               gCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGa                                                                      <  4:10394/149‑1 (MQ=255)                                                                                    aGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTg                                                                 <  1:20009/149‑1 (MQ=255)                                                                                     gCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCAATGATCCACGAACCGCGCCTGCTGATCCTgg                                                                <  1:29714/149‑1 (MQ=255)                                                                                       tGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGa                                                               >  6:161777/1‑148 (MQ=255)                                                                                       tGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCAGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGAc                                                              <  1:266103/149‑1 (MQ=255)                                                                                         gCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGa                                                               <  5:161777/146‑1 (MQ=255)                                                                                          ccAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGaa                                                           >  2:32683/1‑149 (MQ=255)                                                                                           cAAGGAGCGCGCCGAGCAGTACCTGAATCAGCTGTGCCTGTGGGACAAACTTGATGTGCAGTCGAGTTAGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTTCCCGCGCATTGATACACGAACCGAGCCTGATTATCATGGACGAAc                                                          >  4:266938/1‑149 (MQ=255)                                                                                              acatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcaGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGcc                                                                            <  1:350942‑M1/74‑1 (MQ=255)                                                                                              acatcgagcggcgcagctcgatatccaccccggcggtgggttcgtccaggatcaGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGcc                                                                            >  2:350942‑M1/55‑128 (MQ=255)                                                                                                         aGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTg                                            <  5:294507/149‑1 (MQ=255)                                                                                                                ccTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATc                                      >  7:335131/1‑148 (MQ=255)                                                                                                                      tCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATAGAGCTgc                               >  4:176918/1‑149 (MQ=255)                                                                                                                           tGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGcgccgc                          >  5:23212/1‑149 (MQ=255)                                                                                                                                   tgGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGAtgtg                  >  8:202214/1‑149 (MQ=255)                                                                                                                                     ggACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTgg                 <  3:266938/148‑1 (MQ=255)                                                                                                                                      gACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGACCCGCGCCAGCTGATCCTGGACGAACCCCCCGCCGGGGTGGATATCGAGCTGCGCCGCTCCATgaggag               >  6:234288/1‑149 (MQ=255)                                                                                                                                         aaaCGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCtt            >  3:90015/1‑149 (MQ=255)                                                                                                                                          aaCGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTc           <  2:1752/149‑1 (MQ=255)                                                                                                                                          aaCGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGANATCGAGCTGCGCCGCTCGATGTGGAGCTTc           <  1:32683/149‑1 (MQ=255)                                                                                                                                               gATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTCAc      >  7:181468/1‑149 (MQ=255)                                                                                                                                                 tgtgCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTc        >  8:325496/1‑145 (MQ=255)                                                                                                                                                 tgtgCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTc        <  7:325496/145‑1 (MQ=255)                                                                                                                                                  gtgCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTCACt     >  1:161422/1‑147 (MQ=255)                                                                                                                                                   tgCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTCACTGAg  <  1:119006/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCCGCAAGAGTTCAACTTCAACCAGTTCGAAAAGACCTTCGACATCGTCGTGACCCAGGCCGGGTACTACGGCATCCCGCCCAAGCTGGCCAAGGAGCGCGCCGAGCAGTACCTGACTCAGCTGGGCCTGTGGGACAAACGTGATGTGCAGTCGCGTTCGTTGTCCGGCGGCATGAAGCGGCGCCTGATGATTGCCCGCGCATTGATCCACGAACCGCGCCTGCTGATCCTGGACGAACCCACCGCCGGGGTGGATATCGAGCTGCGCCGCTCGATGTGGAGCTTCCTCACTGAG  >  NC_002947/2138146‑2138440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.