New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2943820 =	36 (0.640)	4 (0.070)	4/246	NT	8.8%	coding (249/1641 nt)	PP_2577	paraquat‑inducible protein B
	?	NC_002947	2943854 =	49 (0.910)					coding (283/1641 nt)	PP_2577	paraquat‑inducible protein B

CTCATCGGCGCTTCGCTGGTGGTGCGCAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCGGG  >  NC_002947/2943674‑2943966                                                                                                                                                   |                                                                                                                                                   cTCATCGGCGCTTCGCTGGTGGTGCGCAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTTGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCAAGGTGGACtt                                                                                                                                                  >  7:243555/1‑149 (MQ=255)   ctactcgccggaatcagccccgatgaaactgcccgaaagcagcgtgtccaccccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctgaacCTTg                                                                                                                                                 >  4:288585‑M1/145‑148 (MQ=255)    gactcgccggaatcagccccgatgaaactgcccgaaagcagcgtgtccaccccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctgaacCTTGGc                                                                                                                                               >  3:67830‑M1/144‑149 (MQ=255)                tcagccccgatgaaactgcccgaaagcagcgtgtccaccccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctgaacCTTGGCCGACGACaag                                                                                                                                     <  4:143448‑M1/16‑1 (MQ=255)                 tggtggTGCGCAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTgg                                                                                                                                                <  7:211050/135‑1 (MQ=255)                 tggtggTGCGCAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTgg                                                                                                                                                >  8:211050/1‑135 (MQ=255)                         cgcAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCgtggt                                                                                                                          <  5:267699/149‑1 (MQ=255)                         cgcAACTGGATGCAGCAAGGGCCGGGGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCgtggt                                                                                                                          <  3:41669/149‑1 (MQ=255)                              cTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCa                                                                                                                     <  7:212693/149‑1 (MQ=255)                                     gaaagcagcgtgtccaccccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctgaacCTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCa                                                                                                              >  3:143448‑M1/111‑149 (MQ=255)                                      agcaATGGCAGGTGATTACCATTTCTTTCCAAAGCGGTTAGGGATTGGTTGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTTGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAg                                                                                                             <  8:243555/149‑1 (MQ=255)                                                 gTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGctct                                                                                                         <  6:213554/142‑1 (MQ=255)                                                 gTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGctct                                                                                                         >  5:213554/1‑142 (MQ=255)                                                 gTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCACCAAc                                                                                                    >  7:102200/1‑147 (MQ=255)                                                    accccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctgaacCTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGtt                                                                                                                >  1:265714‑M1/96‑132 (MQ=255)                                                    accccggaaaccccgcccacgccgatgcgcggtcgcaccacccagaagcgcgctccccgggtagcgaatgaacgggcatcgttggagagctcaacCTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGtt                                                                                                                <  2:265714‑M1/37‑1 (MQ=255)                                                    aTTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGAt                                                                                                 >  7:287551/1‑147 (MQ=255)                                                    aTTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGAt                                                                                                 <  8:287551/147‑1 (MQ=255)                                                       aCCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCgtg                                                                                                                            <  2:276707/117‑1 (MQ=255)                                                        ccATTTCTTTCCACAGCGGGTAGGGATTGGTGGCGCACAAGACCCAGGTAAAATAGCGCAGCGTGGTGATTGGCGATGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCTACGATGCCCGt                                                                                           <  7:315982/149‑1 (MQ=255)                                                           tttctttcCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCa                                                                                        >  3:20572/1‑149 (MQ=255)                                                               tttcCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCgtg                                                                                                                            <  2:72943/109‑1 (MQ=255)                                                               tttcCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCgtg                                                                                                                            >  1:72943/1‑109 (MQ=255)                                                                   cacaGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTAc                                                                                <  7:218267/149‑1 (MQ=255)                                                                    acaGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTTGACtt                                                                                                                                                  <  7:239870/82‑1 (MQ=255)                                                                    acaGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACtt                                                                                                                                                  >  8:239870/1‑82 (MQ=255)                                                                             agggaTTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCggg                                                                           >  8:271162/1‑144 (MQ=255)                                                                             agggaTTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCggg                                                                           <  7:271162/144‑1 (MQ=255)                                                                                gaTTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAgcgcgc                                                                   >  4:135267/1‑149 (MQ=255)                                                                                gaTTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAgcgcgc                                                                   >  1:22465/1‑149 (MQ=255)                                                                                  ttgttgGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCTACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCtt                                                                 <  7:192198/149‑1 (MQ=255)                                                                                       ggCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTggg                                                            >  3:304144/1‑149 (MQ=255)                                                                                            acaAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTATCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGgtggtg                                                       >  3:70879/1‑149 (MQ=255)                                                                                                   gcAGGTAAATTAGCGCTGCGTGGTGTTTGGCGAAGTGACCACGGTGGACTTGGCCGACGACTAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGAgcgc                                                <  4:70879/148‑1 (MQ=255)                                                                                                      ggTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCa                                             >  1:18350/1‑149 (MQ=255)                                                                                                          aaaTACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCg                                          <  4:304144/148‑1 (MQ=255)                                                                                                           aaTACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTAGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGc                                        >  7:195836/1‑149 (MQ=255)                                                                                                                   aGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCgg                                <  2:18350/149‑1 (MQ=255)                                                                                                                              tGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCgg                                >  4:77091/1‑138 (MQ=255)                                                                                                                              tGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCgg                                <  3:77091/138‑1 (MQ=255)                                                                                                                               ggCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCgggg                     <  4:20572/148‑1 (MQ=255)                                                                                                                                gCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGc                                        >  3:294360/1‑128 (MQ=255)                                                                                                                                gCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGc                                        <  4:294360/128‑1 (MQ=255)                                                                                                                                gCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTg                   >  1:16639/1‑149 (MQ=255)                                                                                                                                 cGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTTGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCCGGGTg                   >  5:256187/1‑148 (MQ=255)                                                                                                                                        aCCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACgct           >  2:321412/1‑149 (MQ=255)                                                                                                                                        aCCACGGTGGACTTGGCCGACGACAAGAAGAGCGTAGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACgct           <  8:195836/149‑1 (MQ=255)                                                                                                                                              gTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTc     <  2:22465/149‑1 (MQ=255)                                                                                                                                                 gtCTTGGCCGACGACAAGAAGAGCGTGGTGGCTAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCGGGGGTGGACACGCTGCTTTCggg  >  6:256187‑M1/3‑149 (MQ=255)                                                                                                                                                 gACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCGTCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCggg  >  5:342274/1‑149 (MQ=255)                                                                                                                                                 gACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCgg   <  1:321412/148‑1 (MQ=255)                                                                                                                                                  aCTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCggg  >  4:171718/1‑148 (MQ=255)                                                                                                                                                  aCTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCggg  >  3:187493/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CTCATCGGCGCTTCGCTGGTGGTGCGCAACTGGATGCAGCAAGGGCCGGTGATTACCATTTCTTTCCACAGCGGGGAGGGATTGGTGGCGCACAAGACCCAGGTAAAATACCGCAGCGTGGTGATTGGCGAAGTGACCACGGTGGACTTGGCCGACGACAAGAAGAGCGTGGTGGCCAAGGTTCAGCTCTCCAACGATGCCCGTTCATTCGCTACCCGGGGAGCGCGCTTCTGGGTGGTGCGACCGCGCATCGGCGTGGGCGGGGTTTCCGGGGTGGACACGCTGCTTTCGGG  >  NC_002947/2943674‑2943966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.