New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2961033 =	44 (0.780)	7 (0.130)	7/250	NT	14.5%	coding (159/2316 nt)	PP_2590	ferric siderophore receptor
	?	NC_002947	2961073 =	40 (0.730)					coding (119/2316 nt)	PP_2590	ferric siderophore receptor

GGCAGCGCTGGCTTGGGCGTCGATCAGGGTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCGAAGAAGTAAGGCAAA  >  NC_002947/2960886‑2961181                                                                                                                                                    |                                                                                                                                                     ggCAGCGCTGGCTTGGGCGTCGATCAGGGTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACgg                                                                                                                                                     >  5:152297/1‑149 (MQ=255)        cTGGGTTGGGGGTCGATCAGGGTGGCGGGAAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATgcgc                                                                                                                                              <  4:313938/149‑1 (MQ=255)                   gTCGATCAGGGTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCggg                                                                                                                                       >  7:258084/1‑145 (MQ=255)                      gATCAGGGTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGcgcg                                                                                                                                <  2:156521/149‑1 (MQ=255)                         cAGTGTGGCGGGAAATTCGGGGGGGGCGGTTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTTCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCa                                                                                                                             <  1:228120/149‑1 (MQ=255)                         cAGGGGGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCa                                                                                                                             <  5:248404/149‑1 (MQ=255)                           gggTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAgc                                                                                                                           >  4:215298/1‑149 (MQ=255)                                          gccttacttcttcgctttttaaatccaaaaacacaacccgccatctctccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcag                                                                                                             >  8:331464‑M1/107‑148 (MQ=255)                                           ccttacttcttcgctttttaaatgcaaaaacacaacccgccatctgtccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagg                                                                                                            >  4:247085‑M1/106‑148 (MQ=255)                                              gggggCGGGTTTTTCTTCAGCGGCCTCGGGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcag                                                                                                        <  1:348821/149‑1 (MQ=255)                                               ggggggggTTTTTCGTCAGCGGCCTCGGGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcagg                                                                                                       <  8:97677/149‑1 (MQ=255)                                               ggcgggggTGTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcagg                                                                                                       <  2:353973/144‑1 (MQ=255)                                                   cGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGAc                                                                                                   >  2:341455/1‑149 (MQ=255)                                                       tttttCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACga                                                                                                 >  2:316637/1‑147 (MQ=255)                                                         tttttaaatgcaaaaacacaacccgccatctgtccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCca                                                                                                              >  1:5369‑M1/92‑132 (MQ=255)                                                         tttttaaatgcaaaaacacaacccgccatctgtccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCca                                                                                                              <  2:5369‑M1/41‑1 (MQ=255)                                                               aatgcaaaaacacaacccgccatctgtccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcagg                                                                                                       >  3:274055‑M1/86‑133 (MQ=255)                                                               aatgcaaaaacacaacccgccatctgtccctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcagg                                                                                                       <  4:274055‑M1/48‑1 (MQ=255)                                                                aGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGc                                                                                       >  1:127998/1‑148 (MQ=255)                                                                  cGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAg                                                                                    >  8:289911/1‑149 (MQ=255)                                                                    gCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCACGGGACGAGAGTGTGTGCAAGGt                                                                                  <  7:229076/149‑1 (MQ=255)                                                                       tCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAgt                                                                                             <  4:217408/135‑1 (MQ=255)                                                                       tCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAgt                                                                                             >  3:217408/1‑135 (MQ=255)                                                                           gggggTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACTGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATg                                                                           <  6:152297/149‑1 (MQ=255)                                                                           gggggTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATg                                                                           <  3:344858/149‑1 (MQ=255)                                                                              ggTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGa                                                                         >  5:324442/1‑148 (MQ=255)                                                                                       cGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATgg                                                               <  4:113146/149‑1 (MQ=255)                                                                                          cggcggGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTc                                                            <  2:103428/149‑1 (MQ=255)                                                                                           cctctggagccatcgcgtgtccatccgtaccttgcacacactctcgtcccctgccctGGCAT‑TGCCAGCGGGGTGCGCGGCAgcgc                                                                                                                         >  8:275757‑M1/58‑86 (MQ=255)                                                                                             cGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCag                                                         <  6:160008/149‑1 (MQ=255)                                                                                                  gcggcgATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGAAGGGGACGAGAGTGTGTGCAAGGTACGGATCGa                                                                         >  7:275608/1‑128 (MQ=255)                                                                                                  gcggcgATTGGCGCCAGTCTGGAGCTTCCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGa                                                                         <  8:275608/128‑1 (MQ=255)                                                                                                            gcgcCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCgg                                          <  2:127998/149‑1 (MQ=255)                                                                                                            gcgcCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCgg                                          >  4:138308/1‑149 (MQ=255)                                                                                                                  gtgtGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATgg                                                               >  5:148751/1‑122 (MQ=255)                                                                                                                  gtgtGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATgg                                                               <  6:148751/122‑1 (MQ=255)                                                                                                                     tgCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcaggg                                                                                                      >  4:2316/1‑80 (MQ=255)                                                                                                                     tgCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCcagggcaggg                                                                                                      <  3:2316/80‑1 (MQ=255)                                                                                                                         gCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGc                                            <  4:345738/134‑1 (MQ=255)                                                                                                                         gCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGc                                            >  3:345738/1‑134 (MQ=255)                                                                                                                          cTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCa                            >  8:221281/1‑149 (MQ=255)                                                                                                                            aCCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGCACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCAtt                          >  8:77903/1‑149 (MQ=255)                                                                                                                             ccAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCAttt                         <  3:138308/149‑1 (MQ=255)                                                                                                                                 gggCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTaaaa                     <  1:316637/149‑1 (MQ=255)                                                                                                                                    ccaggccaATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGc                  <  7:289911/149‑1 (MQ=255)                                                                                                                                      aggccaATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCga                <  8:270015/149‑1 (MQ=255)                                                                                                                                       ggccaATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCgaa               <  6:324442/149‑1 (MQ=255)                                                                                                                                        gccaATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCg                 >  7:31954/1‑146 (MQ=255)                                                                                                                                          caATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCgaagaa            <  7:77903/149‑1 (MQ=255)                                                                                                                                           aaTGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCACGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGTCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCGaagaag           >  5:305266/1‑149 (MQ=255)                                                                                                                                            aTGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTaa                       >  8:335194/1‑136 (MQ=255)                                                                                                                                            aTGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTaa                       <  7:335194/136‑1 (MQ=255)                                                                                                                                                    GGCATGTGCCAGCGGGGTGCGCGGCATCGCAGGCAATGCCATGGCAGGGGACGAGAGTGTGTGCAAGGTACTGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCGAAGAAGTAAGGCaaa  >  3:215298‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGCAGCGCTGGCTTGGGCGTCGATCAGGGTGGCGGGCAATTCCGGGGGGGCGGGTTTTTCTTCAGCGGCCTCGTGGGGGTTGGCTGCGTCGGCGTGTGCGGCGATTGGCGCCAGTGTGCAGCTACCAAGGGCCAGGCCAATGAATACGGCATGTGCCAGCGGGGTGCGCGGCAGCGCAGGCAATGCCAGGGCAGGGGACGAGAGTGTGTGCAAGGTACGGATGGACACGCGATGGCTCCAGAGGGACAGATGGCGGGTTGTGTTTTTGCATTTAAAAAGCGAAGAAGTAAGGCAAA  >  NC_002947/2960886‑2961181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.