New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2982157 =	46 (0.810)	4 (0.070)	4/250	NT	7.4%	coding (208/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2982210 =	56 (1.030)					coding (155/1734 nt)	PP_2607	hypothetical protein

GGCGCAGGGCATAACGCAGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTGGCGGCAGCGGCAAAACCACC  >  NC_002947/2982010‑2982304                                                                                                                                                    |                                                                                                                                                    tctggagcacacacacaacagcttcgacctggttgtgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTg                                                                                                                                                    <  3:222355‑M1/2‑1 (MQ=255) tctggagcacacacacaacagcttcgacctggttgtgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTg                                                                                                                                                    <  8:168852‑M1/2‑1 (MQ=255)  gcgcAGGGCATAACGCAGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTgg                                                                                                                                                   <  8:162777/149‑1 (MQ=255)   tggagcacacacacaacagcttcgacctggttgtgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTGgc                                                                                                                                                  <  1:62117‑M1/4‑1 (MQ=255)        ggCATAACGCAGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCgg                                                                                                                                             <  6:4747/149‑1 (MQ=255)         gCATAACGCAGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGc                                                                                                                                            >  1:263397/1‑149 (MQ=255)                  aGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGc                                                                                                                                   >  4:281207/1‑149 (MQ=255)                  aGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCACCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGc                                                                                                                                   <  2:106337/149‑1 (MQ=255)                   gTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCt                                                                                                                                  <  4:174704/149‑1 (MQ=255)                    ttCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCtt                                                                                                                                 <  1:296205/149‑1 (MQ=255)                       ggTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGt                                                                                                                              >  5:369174/1‑149 (MQ=255)                         tgtTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCg                                                                                                                            >  1:243355/1‑149 (MQ=255)                           ttCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCAc                                                                                                                                       >  7:189547/1‑136 (MQ=255)                           ttCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCAc                                                                                                                                       <  8:189547/136‑1 (MQ=255)                           ttCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGt                                                                                                                          >  3:111272/1‑149 (MQ=255)                             ctggttgtgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttct                                                                                                                                                     <  2:133084‑M1/1‑1 (MQ=255)                             ctggttgtgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttct                                                                                                                                                     >  1:133084‑M1/120‑120 (MQ=255)                                 tCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCg                                                                                                                            <  5:340428/141‑1 (MQ=255)                                 tCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCg                                                                                                                            >  6:340428/1‑141 (MQ=255)                                 tCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTa                                                                                                                    >  1:59984/1‑149 (MQ=255)                                   cagccagcGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTAc                                                                                                                   <  8:305688/148‑1 (MQ=255)                                    tgctgggcagcggtgccggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAg                                                                                                                 <  3:63166‑M1/37‑1 (MQ=255)                                     gccagcGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGc                                                                                                                <  2:243355/149‑1 (MQ=255)                                      ccagcGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGc                                                                                                                >  6:203671/1‑148 (MQ=255)                                                    cggtggttttgccgctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCa                                                                                                 >  4:63166‑M1/97‑149 (MQ=255)                                                          cATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATc                                                                                           >  2:95539/1‑149 (MQ=255)                                                            tGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGc                                                                                         <  4:111272/149‑1 (MQ=255)                                                             gCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGcc                                                                                        >  2:298676/1‑149 (MQ=255)                                                                 gctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGaaa                                                                                             >  5:174308‑M1/84‑140 (MQ=255)                                                                 gctgccgccaccgcggcccgccgtgggctgaaggtgctggtggtggaaaaagccgaacgctttggcggcacctcggcgatttcTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGaaa                                                                                             <  6:174308‑M1/57‑1 (MQ=255)                                                                 gATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGa                                                                                      <  2:263397/147‑1 (MQ=255)                                                                    gAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTgc                                                                                 >  1:17416/1‑149 (MQ=255)                                                                    gAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTgc                                                                                 >  6:204456/1‑149 (MQ=255)                                                                      aGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTgcc                                                                                <  6:369174/148‑1 (MQ=255)                                                                           tCGCCCAAGGCGGGGGCGTAGCCGTCGCCGATGCCCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCaaa                                                                          <  7:290340/149‑1 (MQ=255)                                                                           tCGCCCAAGGCGGGGGCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCaaa                                                                          <  8:23785/149‑1 (MQ=255)                                                                                      ggggTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCtt                                                               <  5:204456/149‑1 (MQ=255)                                                                                                   tCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGc                                                                        >  2:176816/1‑127 (MQ=255)                                                                                                   tCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGc                                                                        <  1:176816/127‑1 (MQ=255)                                                                                                    cGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGc                                                 <  2:59984/149‑1 (MQ=255)                                                                                                       cGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCAcc                                              >  7:168852/1‑149 (MQ=255)                                                                                                         aTGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGTCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGACATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTATCCACCACCAGCACCtt                                            >  3:263971/1‑149 (MQ=255)                                                                                                            aCCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCa                                          <  1:298676/148‑1 (MQ=255)                                                                                                             ccTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAg                                                  <  1:213325/139‑1 (MQ=255)                                                                                                             ccTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAg                                                  >  2:213325/1‑139 (MQ=255)                                                                                                              cTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGcc                                       >  6:321836/1‑149 (MQ=255)                                                                                                                          ggtGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCCCCCCCAGCACCTTCAGCCCACGGCGGGCcg                           >  6:21279/1‑149 (MQ=255)                                                                                                                            tGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCcgcg                         >  4:222355/1‑149 (MQ=255)                                                                                                                             gcgcATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTccaccacca                                                   >  1:20366/1‑122 (MQ=255)                                                                                                                             gcgcATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTccaccacca                                                   <  2:20366/122‑1 (MQ=255)                                                                                                                               gcATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTg                      >  4:11362/1‑149 (MQ=255)                                                                                                                                 aTTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTggc                    >  6:206463/1‑149 (MQ=255)                                                                                                                                      cTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTcca                                                         <  7:126298/107‑1 (MQ=255)                                                                                                                                      cTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTcca                                                         >  8:126298/1‑107 (MQ=255)                                                                                                                                            ggAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTGGCGGCAGCGGCaa         <  2:17416/149‑1 (MQ=255)                                                                                                                                              aaTCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTGGCGGCAGCGGCaaaa       <  5:203671/149‑1 (MQ=255)                                                                                                                                               aTCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTGGCGGCAGCGGCAAAac      <  1:156219/149‑1 (MQ=255)                                                                                                                                                   ttGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCGCACGGCGGGCCGCGGTGGCGGCAGCGGCAAAaccacc  >  3:54319/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGCGCAGGGCATAACGCAGTTCGGTGTTCTGCTCCAGCCAGCGCAGCGCCTGGTGGCCATGCTCGATGAAGGCGTCGCCCAAGGCGGGGTCGTAGCCGTCGCCGATGACCTGCTTGAGGTAGGTGCGCATTGCCTCGGGGGAATCCTTGGCGCCGGCGTCACGGGCTTGGTCGGTGCCGTACAGCCACACCGCGCCGCCAGAAATCGCCGAGGTGCCGCCAAAGCGTTCGGCTTTTTCCACCACCAGCACCTTCAGCCCACGGCGGGCCGCGGTGGCGGCAGCGGCAAAACCACC  >  NC_002947/2982010‑2982304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.