| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2992621 = | 48 (0.850) | 4 (0.070) | 4/248 | NT | 8.3% | coding (452/870 nt) | PP_2616 | hypothetical protein |
| ? | NC_002947 | 2992664 = | 43 (0.800) | coding (409/870 nt) | PP_2616 | hypothetical protein | |||||
GAGCGCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTC > NC_002947/2992473‑2992763 | gagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgcgccagcacggttacgagccggctcagttgctggcgtactcctacggtctgtgcctgttcatagacgaggccgttatgga > 3:144766‑M1/149‑149 (MQ=255) gcgTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGTCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑gg < 5:179569/149‑1 (MQ=17) tccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgcgccagcacggttacgagccggctcagttgctggcgtactcctacggtctgtgcctgttcatagacgaggccgttatggAGC‑GGCTCCTGGCt < 5:286410‑M1/14‑1 (MQ=255) aGCCCAAGGCACAGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCcagca < 5:81306/149‑1 (MQ=32) cccttggCACAGGGCGAAGTACTTGTTCTCGTGTTCGTCCTGATAACGGTTGGGCGCCTGCATCAGGCGGTTAATCACGGTGATGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCATC‑GGCTCCTGGCTCcagcag < 2:314008/143‑1 (MQ=11) gcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgcgccagcacggttacgagccggctcagttgctggcgtactcctacggtctgtgcctgttcatagacgaggccgttatggAGC‑GGCTCCTGGCTCCAGCAgctg < 6:261142‑M1/24‑1 (MQ=255) cAAGGCACAGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAgctg > 5:199308/1‑149 (MQ=34) caGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGc < 5:372739/149‑1 (MQ=37) caGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGc > 3:140045/1‑149 (MQ=37) ggCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGcc < 8:140280/147‑1 (MQ=37) cGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAgctgc > 1:216932/1‑138 (MQ=34) cGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAgctgc < 2:216932/138‑1 (MQ=34) gAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCTCAgg < 4:324122/149‑1 (MQ=37) agccagatcgacaacattcaggaagaaatgcgccagcacggttacgagccggctcagttgctggcgtactcctacggtctgtgcctgttcatagacgaggccgttatggAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGcc > 5:261142‑M1/110‑149 (MQ=255) cATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCt > 5:145891/1‑149 (MQ=37) aTGAAGACCAGTACGTCCTGATAAGCCCAGGCCACCTCCATCACGCCCCACACCACGGCCAAGAACTTCTCCCCCCCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GCCCCCTGCCCCCAGCAGCTGCTCTTGCCCCAGGGCCGCTc < 4:130185/149‑1 (MQ=2) gatcttcatcattgatgaagaaatgcgccagcacggttacgagccggctgagttgctggcgtactcctacggtgtgtgcctgttcatagacgaggccgttatggAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTcc > 6:286410‑M1/105‑149 (MQ=255) tCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCcag < 6:288695/117‑1 (MQ=32) tCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCcag > 5:288695/1‑117 (MQ=32) ccAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACg > 5:355720/1‑149 (MQ=40) gATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAggg < 7:233845/124‑1 (MQ=38) gATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAggg > 8:233845/1‑124 (MQ=38) aTAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTAt < 6:355720/147‑1 (MQ=255) cGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAg < 6:145891/149‑1 (MQ=255) catcatCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGcac < 7:108171/144‑1 (MQ=255) cTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGc > 6:9364/1‑83 (MQ=33) cTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGc < 5:9364/83‑1 (MQ=33) cTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCg > 5:177772/1‑148 (MQ=255) aTCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGa < 2:333450/149‑1 (MQ=255) aTCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGa < 6:199308/149‑1 (MQ=255) tCAGGCGGGTAATCACGGTGAAGATTTTTTCCACACACCAGGTCTAGTCGTGTAAGATGCTGAGCAGC‑GCCTCCAGTCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAAAGGCATCGTATATGAACACGCACAGAACGTAGGAg > 5:53424/1‑149 (MQ=17) gCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTATCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACg > 8:158920/1‑149 (MQ=255) gggTAATAACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTAGATGAACAGGCACAGACCGTAGGACTACGc > 8:170305/1‑148 (MQ=255) gTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGc < 7:158920/149‑1 (MQ=255) tGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGACAGCAACTGAGcc > 6:215428/1‑149 (MQ=255) aaGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCgg > 2:202670/1‑149 (MQ=255) aGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGc < 4:146105/149‑1 (MQ=255) gATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTc > 6:208305/1‑102 (MQ=255) gATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTc < 5:208305/102‑1 (MQ=255) gATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTACAGCAGCTGATCTTGCCCCAAGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGAACGTAGGAGTACGCCAGCAAATGAGCCgg > 7:54075/1‑147 (MQ=17) aTTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTc > 3:239214/1‑149 (MQ=255) ttttttCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCg < 4:140045/149‑1 (MQ=255) tttttCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCAGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCCGGGCCGCTCCATAACGGCCTCGTATCTTAACAGGCACAGACCGTAGGAGTACGCCCGCAACTGAGCCGGCTCg > 1:252565/1‑149 (MQ=17) tttttCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGt < 6:166931/125‑1 (MQ=255) tttttCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGt > 5:166931/1‑125 (MQ=255) caGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCACAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCCTATGACTAAGCCACCAACTGAGCCGGCTCGTAACCGTGCTGgcg > 1:100535/1‑149 (MQ=18) aGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGgcg > 2:158558/1‑148 (MQ=255) gAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACATGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGaa > 7:237738/1‑149 (MQ=255) gAAGATGCTGAGCAGC‑GGCTCCAGGCTCCAGCAGCTGCTCTTGCCCCAGGGCAGCTCCAAAACGGCCTCCTCTATGAACACGCACAGACCGTAGGAGTACGCCAGCAACTCAGCACGCACCTAACCGTCCTGGCGCATTTCTTCCTTaa > 8:245828/1‑149 (MQ=17) aGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtg < 1:202670/149‑1 (MQ=255) gCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt > 2:358199/1‑149 (MQ=255) cTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt < 8:237738/148‑1 (MQ=255) cTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTc < 7:245828/149‑1 (MQ=255) cTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTc < 4:239214/149‑1 (MQ=255) | GAGCGCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACATGAACTCCAGTACGTCCTGATAACGCTTGGGCTCCTGCATCAGGCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGC‑GGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTC > NC_002947/2992473‑2992763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |