New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3143950 =	46 (0.810)	3 (0.060)	3/246	NT	6.5%	coding (874/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
	?	NC_002947	3143991 =	43 (0.800)					coding (915/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit

AGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGCCCGAGGAGCGCCGTCGGCA  >  NC_002947/3143802‑3144098                                                                                                                                                     |                                                                                                                                                     ggtggtgttctcctgcacgctcagatcaagcgccacgccttgccgacggcgctcctcgggcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtg                                                                                                                                                      >  1:333868‑M1/149‑149 (MQ=255)   tggtgttctcctgcacgctcagatcaagcgccacgccttgccgacggcgctcctcgggcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtGgc                                                                                                                                                    <  8:148780‑M1/3‑1 (MQ=255)       gttctcctgcacgctcagatcaagcgccacgccttgccgacggcgctcctcgggcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtGgcgc                                                                                                                                                  <  3:299396‑M1/5‑1 (MQ=255)         aGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAg                                                                                                                                              <  2:311045/149‑1 (MQ=255)           cTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGa                                                                                                                                            <  8:81901/149‑1 (MQ=255)             gTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGt                                                                                                                                          >  4:323977/1‑149 (MQ=255)              tACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGTGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGTTGGTCTCGGGCGCCAAGGAGt                                                                                                                                          >  2:263280/1‑148 (MQ=255)                ccccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTg                                                                                                                                        <  1:157894/148‑1 (MQ=255)                 cccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGc                                                                                                                                       >  8:128272/1‑148 (MQ=255)                    aaGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACg                                                                                                                                   <  4:174274/149‑1 (MQ=255)                            ggTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCt                                                                                                                             <  2:224584/147‑1 (MQ=255)                            ggTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCt                                                                                                                             >  1:224584/1‑147 (MQ=255)                                       gTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGgcg                                                                                                                >  3:253686/1‑149 (MQ=255)                                           gcTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTCCCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCAc                                                                                                            >  8:200273/1‑149 (MQ=255)                                            cgacggcgctcctcgggcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCAcc                                                                                                           >  8:293596‑M1/106‑149 (MQ=255)                                              gTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCg                                                                                                          >  5:83188/1‑148 (MQ=255)                                                     gACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAgcg                                                                                                   <  8:336091/148‑1 (MQ=255)                                                            gcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCAc                                                                                                            <  3:181503‑M1/43‑1 (MQ=255)                                                            gcatcagcgcgacgccctgggcgacagcctcgcgcggactgcgcaaggacaacggttgcccgtccaggcgcacctcgccgctgtccggtGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCAc                                                                                                            >  4:181503‑M1/90‑132 (MQ=255)                                                                  tGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGtt                                                                                                                          >  3:295149/1‑112 (MQ=255)                                                                  tGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGtt                                                                                                                          <  4:295149/112‑1 (MQ=255)                                                                     tgcgtgcTCGGGCCTAGCAGGGCATCGACGTGGAGGTGCGCCGGGGCGTGAATGTCGGCCTCACCGGGCTTGTGGGCTCGGGCGCCAAGGATGTGCTACGCCGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCTATGTGCGCCTGGAc                                                                                  <  1:263280/148‑1 (MQ=255)                                                                       cgggcACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACgg                                                                                <  4:253686/149‑1 (MQ=255)                                                                           cACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCaa                                                                            >  4:84296/1‑149 (MQ=255)                                                                              gggCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCg                                                                         >  3:185703/1‑149 (MQ=255)                                                                                gCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGtt                                                                       <  2:241425/149‑1 (MQ=255)                                                                                gCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGtt                                                                       <  6:6118/149‑1 (MQ=255)                                                                                  cTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGt                                                                     <  7:128272/149‑1 (MQ=255)                                                                                     ccAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTc                                                                    <  3:323977/147‑1 (MQ=255)                                                                                     ccAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCt                                                                  >  8:148285/1‑149 (MQ=255)                                                                                     ccAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCt                                                                  >  7:253502/1‑149 (MQ=255)                                                                                        gggCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTgc                                                               >  3:66592/1‑149 (MQ=255)                                                                                                aCCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCcg                                                       >  2:306426/1‑149 (MQ=255)                                                                                                 ccTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCcgc                                                      <  1:306426/149‑1 (MQ=255)                                                                                                 ccTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCcgc                                                      >  4:50608/1‑149 (MQ=255)                                                                                                     cAGGTGCGCCGTGGCGAGATGGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGa                                                  <  4:355244/149‑1 (MQ=255)                                                                                                           cgcCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGt                                            <  4:185703/149‑1 (MQ=255)                                                                                                                  gCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCa                                      <  6:83188/148‑1 (MQ=255)                                                                                                                    gagaTCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCtt                                                                 <  3:32171/119‑1 (MQ=255)                                                                                                                    gagaTCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCtt                                                                 >  4:32171/1‑119 (MQ=255)                                                                                                                      gaTCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCg                                          <  3:11015/140‑1 (MQ=255)                                                                                                                      gaTCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCg                                          >  4:11015/1‑140 (MQ=255)                                                                                                                          gtcgGCCTCACCGGGTTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTcgc                             >  6:210000/1‑149 (MQ=255)                                                                                                                              gCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCt                          >  5:190784/1‑148 (MQ=255)                                                                                                                               ccTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGa                        <  3:84296/149‑1 (MQ=255)                                                                                                                                cTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGAt                       <  7:200273/149‑1 (MQ=255)                                                                                                                                cTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGACCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGAt                       <  5:117138/149‑1 (MQ=255)                                                                                                                                   aCCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGc                     <  8:253502/148‑1 (MQ=255)                                                                                                                                     cGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGccc                   >  8:302272/1‑148 (MQ=255)                                                                                                                                            gtggGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGCCCGAGGAgcg           >  4:299396/1‑149 (MQ=255)                                                                                                                                               ggCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTg                                                                >  2:146912/1‑93 (MQ=255)                                                                                                                                               ggCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTg                                                                <  1:146912/93‑1 (MQ=255)                                                                                                                                                gCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGCCCGAGGAGCGCCGt       >  4:53979/1‑149 (MQ=255)                                                                                                                                                     GGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGCCCGAGGAGCGCCGTCGGCa  >  4:66592‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGGTGCGCCTGGACGGGCAACCGTTGTCCTTGCGCAGTCCGCGCGAGGCTGTCGCCCAGGGCGTCGCGCTGATGCCCGAGGAGCGCCGTCGGCA  >  NC_002947/3143802‑3144098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.