New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4279517 =	42 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (717/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	4279572 =	37 (0.680)					coding (772/1434 nt)	PP_3750	GntR family transcriptional regulator

CCCAGCAGGCGCTGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGA  >  NC_002947/4279369‑4279650                                                                                                                                                      |                                                                                                                                      cccAGCAGGCGCTGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCtg                                                                                                                                       <  3:198411/149‑1 (MQ=255)     gacgctgcagcgcgtccgaggctggcccgtggtagcggaactcacagtcgtagtcgtcttcgatgatcagtgcacccagctcggcggcccgcgcaagcagggcatgccggcgtggctcgctcatcggcatgcccagcgggaactgGTGc                                                                                                                                    >  3:13832‑M1/146‑149 (MQ=255)      cagGCGCTGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGt                                                                                                                                  <  5:33623/149‑1 (MQ=255)        ggCGCTGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTgg                                                                                                                                <  3:146860/149‑1 (MQ=255)             tGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGaa                                                                                                                              >  3:259970/1‑146 (MQ=255)                                  tGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCt                                                                                                       >  4:108197/1‑148 (MQ=255)                                            gggCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGt                                                                                                                                  <  5:124494/111‑1 (MQ=255)                                            gggCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGt                                                                                                                                  >  6:124494/1‑111 (MQ=255)                                                    aGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCg                                                                                    >  7:28712/1‑149 (MQ=255)                                                     tgTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGc                                                                                   <  8:154020/148‑1 (MQ=255)                                                          ccATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACg                                                                                                                 <  8:28446/114‑1 (MQ=255)                                                          ccATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACg                                                                                                                 >  7:28446/1‑114 (MQ=255)                                                           cATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGt                                                                             <  6:316582/149‑1 (MQ=255)                                                            gtcttcgatgctcagtgcacccagctcggcggcccgcgcaagcagggcatgccggcgtggctcgctcatcggcatgcccagcgggaactgGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAg                                                                              >  8:131825‑M1/91‑148 (MQ=255)                                                              ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCa                                                                               <  6:321928/144‑1 (MQ=255)                                                              ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCa                                                                               >  5:321928/1‑144 (MQ=255)                                                              ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTcc                                                                          >  8:205485/1‑149 (MQ=255)                                                               gAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTccc                                                                         >  1:312031/1‑149 (MQ=255)                                                                           tACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGcc                                                             >  3:3087/1‑149 (MQ=255)                                                                              acccagctcggcggcccgcgcaagcagggcatgccggcgtggctcgctcatcggcatgcccagcgggaactgGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCAc                                                                                 >  3:95318‑M1/73‑127 (MQ=255)                                                                              acccagctcggcggcccgcgcaagcagggcatgccggcgtggctcgctcatcggcatgcccagcgggaactgGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCAc                                                                                 <  4:95318‑M1/55‑1 (MQ=255)                                                                                    gcacggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCt                                                                                                  >  8:249487/1‑103 (MQ=255)                                                                                    gcacggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCt                                                                                                  <  7:249487/103‑1 (MQ=255)                                                                                    gcacggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCg                                                                                    <  3:237722/117‑1 (MQ=255)                                                                                    gcacggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCg                                                                                    >  4:237722/1‑117 (MQ=255)                                                                                        ggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCa                                                >  5:102093/1‑149 (MQ=255)                                                                                         gcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCAc                                               >  3:287523/1‑149 (MQ=255)                                                                                         gcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCAc                                               >  7:202206/1‑149 (MQ=255)                                                                                           aaTTGTTACTGGCCCTGGGTGCCCCCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGAGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCACGCTGGGCATGCCGATGAGCGAGCCACGc                                             >  1:337587/1‑149 (MQ=255)                                                                                                  ccTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATga                                                        >  2:172947/1‑131 (MQ=255)                                                                                                  ccTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATga                                                        <  1:172947/131‑1 (MQ=255)                                                                                                       cccTGGGTGCACGCCTGCAATCGGTGCCGGATGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGTCATGCCGATGAGCGAGCCACGCCGGCATGCCCt                                  >  1:215573/1‑149 (MQ=255)                                                                                                        ccTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGc                                >  1:61951/1‑149 (MQ=255)                                                                                                                cACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCgg                        <  3:335474/149‑1 (MQ=255)                                                                                                                   gCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTAc                                                                                                <  6:315742/74‑1 (MQ=255)                                                                                                                   gCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTAc                                                                                                >  5:315742/1‑74 (MQ=255)                                                                                                                        cAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                <  6:102093/149‑1 (MQ=255)                                                                                                                          aTCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGc              >  7:295409/1‑149 (MQ=255)                                                                                                                          aTCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGc              <  8:295409/149‑1 (MQ=255)                                                                                                                             ggTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTgg           <  3:108197/149‑1 (MQ=255)                                                                                                                             ggTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTgg           <  8:28712/149‑1 (MQ=255)                                                                                                                              gTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTggg          >  7:142346/1‑149 (MQ=255)                                                                                                                              gTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTggg          <  4:259970/149‑1 (MQ=255)                                                                                                                                   gg‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCAc     <  2:312031/149‑1 (MQ=255)                                                                                                                                        gatgatGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGa  >  2:32602/1‑148 (MQ=255)                                                                                                                                            atgaGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                >  2:50638/1‑130 (MQ=255)                                                                                                                                            atgaGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                <  1:50638/130‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                      CCCAGCAGGCGCTGGACCTGATCGCCCGGGTGCTGGTCGAACCGGGCTGCCAGGTGGCCATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGA  >  NC_002947/4279369‑4279650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.