New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4279517 =	42 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (717/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	4279572 =	37 (0.680)					coding (772/1434 nt)	PP_3750	GntR family transcriptional regulator

CATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAGCGTC  >  NC_002947/4279427‑4279716                                                                                                                                                   |                                                                                                                                                  cATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGt                                                                                                                                                <  6:316582/149‑1 (MQ=255)  gtcttcgatgctcagtgcacccagctcggcggcccgcgcaagcagggcatgccggcgtggctcgctcatcggcatgcccagcgggaactgGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAg                                                                                                                                                 >  8:131825‑M1/91‑148 (MQ=255)    ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCa                                                                                                                                                  >  5:321928/1‑144 (MQ=255)    ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCa                                                                                                                                                  <  6:321928/144‑1 (MQ=255)    ggAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTcc                                                                                                                                             >  8:205485/1‑149 (MQ=255)     gAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTccc                                                                                                                                            >  1:312031/1‑149 (MQ=255)                 tACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGcc                                                                                                                                >  3:3087/1‑149 (MQ=255)                              ggcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCa                                                                                                                   >  5:102093/1‑149 (MQ=255)                               gcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCAc                                                                                                                  >  3:287523/1‑149 (MQ=255)                               gcaATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCAc                                                                                                                  >  7:202206/1‑149 (MQ=255)                                 aaTTGTTACTGGCCCTGGGTGCCCCCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGAGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCACGCTGGGCATGCCGATGAGCGAGCCACGc                                                                                                                >  1:337587/1‑149 (MQ=255)                                        ccTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATga                                                                                                                           <  1:172947/131‑1 (MQ=255)                                        ccTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATga                                                                                                                           >  2:172947/1‑131 (MQ=255)                                             cccTGGGTGCACGCCTGCAATCGGTGCCGGATGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGTCATGCCGATGAGCGAGCCACGCCGGCATGCCCt                                                                                                     >  1:215573/1‑149 (MQ=255)                                              ccTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGc                                                                                                   >  1:61951/1‑149 (MQ=255)                                                      cACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCgg                                                                                           <  3:335474/149‑1 (MQ=255)                                                              cAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                                                                                   <  6:102093/149‑1 (MQ=255)                                                                aTCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGc                                                                                 >  7:295409/1‑149 (MQ=255)                                                                aTCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGc                                                                                 <  8:295409/149‑1 (MQ=255)                                                                   ggTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTgg                                                                              <  3:108197/149‑1 (MQ=255)                                                                   ggTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTgg                                                                              <  8:28712/149‑1 (MQ=255)                                                                    gTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTggg                                                                             >  7:142346/1‑149 (MQ=255)                                                                    gTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTggg                                                                             <  4:259970/149‑1 (MQ=255)                                                                         gg‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCAc                                                                        <  2:312031/149‑1 (MQ=255)                                                                              gatgatGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGa                                                                     >  2:32602/1‑148 (MQ=255)                                                                                  atgaGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                                                                                   >  2:50638/1‑130 (MQ=255)                                                                                  atgaGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGa                                                                                   <  1:50638/130‑1 (MQ=255)                                                                                         ctggtgcgagggtgtgacgtagatcagccgggtgccgtcggcgatctgttccacgcacCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGAGCATCGAAgac                                                          >  8:131825‑M2/59‑148 (MQ=255)                                                                                            gtgcgagggtgtgacgtagatcagccgggtgccgtcggcgatctgttccacgcacCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGt                                                                            >  3:95318‑M2/56‑127 (MQ=255)                                                                                            gtgcgagggtgtgacgtagatcagccgggtgccgtcggcgatctgttccacgcacCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGt                                                                            <  4:95318‑M2/72‑1 (MQ=255)                                                                                             TGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTa                                                     >  2:61951‑M1/1‑149 (MQ=255)                                                                                                  ggAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTCATCATCGAAGacgacta‑cgact                                               >  1:308025/1‑149 (MQ=255)                                                                                                   gAAGAGATCGGAGACGGCACCCGGCTGATCTACGTGACACCCTCGCACCAGTGCCCTCTGGGCATGCCGATGAGGGATCCACGCCGGCATGCCCTGCTTGCGGGGGCCGCCGAGCTGGGTGCACTGATCTTCGAAGacgacta‑cgact                                               <  2:337587/148‑1 (MQ=255)                                                                                                   gAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAgac                                                          <  5:341653/138‑1 (MQ=255)                                                                                                   gAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAgac                                                          >  6:341653/1‑138 (MQ=255)                                                                                                      cAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGa                                           <  4:287523/149‑1 (MQ=255)                                                                                                                         ggCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCa                        <  8:202206/149‑1 (MQ=255)                                                                                                                             gATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCt                    >  3:277032/1‑149 (MQ=255)                                                                                                                              aTCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGacgacta                                                     <  2:351240/116‑1 (MQ=255)                                                                                                                              aTCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGacgacta                                                     >  1:351240/1‑116 (MQ=255)                                                                                                                              aTCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTACCGACTGTGAGTTCCGCTACCACGGGCCAGc                      <  1:32602/147‑1 (MQ=255)                                                                                                                                 tACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGAGGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGa                >  5:311342/1‑149 (MQ=255)                                                                                                                                     tCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGAcgcg            <  2:308025/149‑1 (MQ=255)                                                                                                                                     tCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGAcgcg            >  7:327651/1‑149 (MQ=255)                                                                                                                                      cacaCCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACgcgc           >  5:356674/1‑149 (MQ=255)                                                                                                                                           ccTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAg      >  8:9750/1‑149 (MQ=255)                                                                                                                                               gcacCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAGCGTc  >  3:13832‑M2/5‑149 (MQ=255)                                                                                                                                                   cAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAGCGTc  <  7:167876/145‑1 (MQ=255)                                                                                                                                                   cAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAGCGTc  >  8:167876/1‑145 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CATGGAAGATCCTGGCTACCCGCCGGCACGGCAATTGTTCCTGGCCCTGGGTGCACGCCTGCAATCGGTGCCGG‑TGGATGATGAGGGCCTGTGCGTGGAACAGATCGCCGACGGCACCCGGCTGATCTACGTCACACCCTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCGAGCCACGCCGGCATGCCCTGCTTGCGCGGGCCGCCGAGCTGGGTGCACTGATCATCGAAGACGACTA‑CGACTGTGAGTTCCGCTACCACGGGCCAGCCTCGGACGCGCTGCAGCGTC  >  NC_002947/4279427‑4279716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.