New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4281263 =	35 (0.620)	3 (0.060)	3/246	NT	7.4%	coding (161/1197 nt)	PP_3751	cyanate transporter
	?	NC_002947	4281337 =	42 (0.780)					coding (87/1197 nt)	PP_3751	cyanate transporter

GCCACCAGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTT  >  NC_002947/4281116‑4281408                                                                                                                                                    |                                                                                                                                                   ctgccaggccagccgagccgggataatggccagttcctgttacaagagaaccgactcacaatgagcgctgtactgaacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaac                                                                                                                                                    >  5:280205‑M1/148‑148 (MQ=255)  ccaccaGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGccc                                                                                                                                                  <  4:320900/149‑1 (MQ=255)  ccaccaGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGccc                                                                                                                                                  <  6:73088/149‑1 (MQ=255)  ccaccaGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGcc                                                                                                                                                   >  2:195584/1‑148 (MQ=255)   gccaggccagccgagccgggataatggccagttcctgttacaagagaaccgactcacaatgagcgctgtactgaacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCa                                                                                                                                                 <  1:275112‑M1/4‑1 (MQ=255)   gccaggccagccgagccgggataatggccagttcctgttacaagagaaccgactcacaatgagcgctgtactgaacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCa                                                                                                                                                 <  4:308759‑M1/4‑1 (MQ=255)    ccaggccagccgagccgggataatggccagttcctgttacaagagaaccgactcacaatgagcgctgtactgaacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaccc                                                                                                                                                  >  8:339060‑M1/145‑147 (MQ=255)     ccaGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATg                                                                                                                                               <  7:319443/149‑1 (MQ=255)                    tCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAgc                                                                                                                                >  3:109495/1‑149 (MQ=255)                       gcgcCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGcc                                                                                                                             >  2:251846/1‑149 (MQ=255)                         gcCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGt                                                                                                                           <  4:285731/149‑1 (MQ=255)                                      ccAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGg‑cc                                                                                                                <  5:349742/146‑1 (MQ=255)                                      ccAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGg‑cc                                                                                                                >  6:349742/1‑146 (MQ=255)                                         tcttcAGGCGCAACACGCAGGCCAGGGCAATCGCGGCAAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGATGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGACAGCAAGG‑CCGCctgc                                                                                                          >  2:7200/5‑149 (MQ=255)                                                gcgcCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAAc                                                                                                   >  8:114846/1‑149 (MQ=255)                                                       aggcaggcCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGcc                                                                                            >  5:8069/1‑149 (MQ=255)                                                          acaatgagcgctgtactgaacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGt                                                                                         <  6:14322‑M1/59‑1 (MQ=255)                                                             gcCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCCGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCt                                                                                      >  7:85495/1‑149 (MQ=255)                                                                       tCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCCCCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTCACCCAGGACGGTGCTGGCGCGCagg                                                                            >  3:20845/1‑147 (MQ=255)                                                                            aacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTc                                                                       >  5:14322‑M1/73‑149 (MQ=255)                                                                             ccAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCg                                                                      <  5:79354/149‑1 (MQ=255)                                                                             acctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCg                                                                      >  4:55672‑M1/72‑149 (MQ=255)                                                                              cAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                     <  2:80276/149‑1 (MQ=255)                                                                                     cccAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACgg                                                              >  8:135176/1‑149 (MQ=255)                                                                                      ccAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACggg                                                             <  1:195584/149‑1 (MQ=255)                                                                                       cAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGTATGGGTTCGAGTAACGGGc                                                            <  7:114846/149‑1 (MQ=255)                                                                                           aTGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTg                                                                                     <  2:341440/120‑1 (MQ=255)                                                                                           aTGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTg                                                                                     >  1:341440/1‑120 (MQ=255)                                                                                               cgccATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGGTCCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                     <  1:74756/133‑1 (MQ=255)                                                                                               cgccATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                     >  2:74756/1‑132 (MQ=255)                                                                                                    tGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAg                                               >  5:276378/1‑149 (MQ=255)                                                                                                               ccAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCTCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCa                                    <  7:135176/149‑1 (MQ=255)                                                                                                                cAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCTAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAg                                   <  4:109495/149‑1 (MQ=255)                                                                                                                cAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAg                                   >  5:97552/1‑149 (MQ=255)                                                                                                                   cGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGtt                                >  7:315122/1‑149 (MQ=255)                                                                                                                        cAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACg                           >  4:276866/1‑149 (MQ=255)                                                                                                                        cAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACg                           >  5:344531/1‑149 (MQ=255)                                                                                                                             aCGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagc                      <  3:276866/149‑1 (MQ=255)                                                                                                                              cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCa                                                <  8:292757/122‑1 (MQ=255)                                                                                                                              cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCa                                                >  7:292757/1‑122 (MQ=255)                                                                                                                              cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagca                     <  1:251846/149‑1 (MQ=255)                                                                                                                                    cAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATc                <  6:97552/148‑1 (MQ=255)                                                                                                                                      aCAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCAcc             <  1:7200/149‑1 (MQ=255)                                                                                                                                       cAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCa            <  6:8069/149‑1 (MQ=255)                                                                                                                                            gCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCaa        >  3:202553/1‑148 (MQ=255)                                                                                                                                                 aGGCCCATGCACAGCCCCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGtt  <  8:85495/149‑1 (MQ=255)                                                                                                                                                 aGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGt   >  8:226444/1‑148 (MQ=255)                                                                                                                                                   gCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGAt                                                        <  4:207632/93‑1 (MQ=255)                                                                                                                                                   gCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGAt                                                        >  3:207632/1‑93 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCACCAGCGCACTGGCGATCAGCGCCCAGGCACTGTCCAGCTGCAGGCGCCACAGGCAGGCCAGGGCAATCGCGGCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTT  >  NC_002947/4281116‑4281408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.