New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4281263 =	35 (0.620)	3 (0.060)	3/246	NT	7.4%	coding (161/1197 nt)	PP_3751	cyanate transporter
	?	NC_002947	4281337 =	42 (0.780)					coding (87/1197 nt)	PP_3751	cyanate transporter

GCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAG  >  NC_002947/4281191‑4281483                                                                                                                                                    |                                                                                                                                                   aacctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTc                                                                                                                                                  >  5:14322‑M1/73‑149 (MQ=255)  ccAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCg                                                                                                                                                 <  5:79354/149‑1 (MQ=255)  acctgttgctggtgatcctgctggcgttgaacctgcggccgatcctgaccagtatcggcccgttactcgaaCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCg                                                                                                                                                 >  4:55672‑M1/72‑149 (MQ=255)   cAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                                                                                                <  2:80276/149‑1 (MQ=255)          cccAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACgg                                                                                                                                         >  8:135176/1‑149 (MQ=255)           ccAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACggg                                                                                                                                        <  1:195584/149‑1 (MQ=255)            cAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGTATGGGTTCGAGTAACGGGc                                                                                                                                       <  7:114846/149‑1 (MQ=255)                    cgccATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGGTCCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                                                                                                <  1:74756/133‑1 (MQ=255)                    cgccATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGa                                                                                                                                                >  2:74756/1‑132 (MQ=255)                         tGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAg                                                                                                                          >  5:276378/1‑149 (MQ=255)                                    ccAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCTCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCa                                                                                                               <  7:135176/149‑1 (MQ=255)                                     cAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCTAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAg                                                                                                              <  4:109495/149‑1 (MQ=255)                                     cAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAg                                                                                                              >  5:97552/1‑149 (MQ=255)                                        cGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGtt                                                                                                           >  7:315122/1‑149 (MQ=255)                                             cAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACg                                                                                                      >  5:344531/1‑149 (MQ=255)                                             cAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACg                                                                                                      >  4:276866/1‑149 (MQ=255)                                                  aCGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagc                                                                                                 <  3:276866/149‑1 (MQ=255)                                                   cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCa                                                                                                                           >  7:292757/1‑122 (MQ=255)                                                   cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCa                                                                                                                           <  8:292757/122‑1 (MQ=255)                                                   cGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagca                                                                                                <  1:251846/149‑1 (MQ=255)                                                         cAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATc                                                                                           <  6:97552/148‑1 (MQ=255)                                                           aCAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCAcc                                                                                        <  1:7200/149‑1 (MQ=255)                                                            cAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCa                                                                                       <  6:8069/149‑1 (MQ=255)                                                                 gCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCaa                                                                                   >  3:202553/1‑148 (MQ=255)                                                                      cgaacccatgcgcgccagcaccggcctgggttaccagcaggcggccttgctgacggcgctaccggtgctgtgcatgggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGt                                                                              >  4:55672‑M2/79‑149 (MQ=255)                                                                      aGGCCCATGCACAGCCCCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGtt                                                                             <  8:85495/149‑1 (MQ=255)                                                                      aGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGt                                                                              >  8:226444/1‑148 (MQ=255)                                                                       gaacccatgcgcgccagcaccggcctgggttaccagcaggcggccttgctgacggcgctaccggtgctgtgcatgggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGtt                                                                             >  5:14322‑M2/78‑149 (MQ=255)                                                                        gCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGAt                                                                                                                                   <  4:207632/93‑1 (MQ=255)                                                                        gCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGAt                                                                                                                                   >  3:207632/1‑93 (MQ=255)                                                                                 caGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAgcgc                                                                  <  7:226444/149‑1 (MQ=255)                                                                                    cACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCa                                                               <  4:202553/149‑1 (MQ=255)                                                                                     aCCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCAt                                                              <  8:315122/149‑1 (MQ=255)                                                                                        ggTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTa                                                                        >  4:249735/1‑136 (MQ=255)                                                                                        ggTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTa                                                                        <  3:249735/136‑1 (MQ=255)                                                                                         accggcctgggttaccagcaggcggccttgctgacggcgctaccggtgctgtgcatgggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATtgt                                                           <  6:14322‑M2/90‑1 (MQ=255)                                                                                               ccGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCgg                                                    <  6:276378/149‑1 (MQ=255)                                                                                                       aaGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTtctc                                               >  8:44731/1‑146 (MQ=255)                                                                                                       aaGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTtctc                                               <  7:44731/146‑1 (MQ=255)                                                                                                        aGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagca                                                                                                >  4:154369/1‑96 (MQ=255)                                                                                                        aGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCcagca                                                                                                <  3:154369/96‑1 (MQ=255)                                                                                                             cgccTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTaa                                         >  2:229842/1‑147 (MQ=255)                                                                                                                ctgctgGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCTCTCATTGTGAGTCGGTTCTCTTGTAACAgg                                     >  1:97215/1‑148 (MQ=255)                                                                                                                    tgGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTg                                >  3:308759/1‑149 (MQ=255)                                                                                                                     ggTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTgg                               >  6:311030/1‑149 (MQ=255)                                                                                                                         aCCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCAt                           >  2:275112/1‑149 (MQ=255)                                                                                                                          cccAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAgcg                                                                   <  4:306168/108‑1 (MQ=255)                                                                                                                          cccAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAgcg                                                                   >  3:306168/1‑108 (MQ=255)                                                                                                                           ccAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTa                         >  2:262463/1‑149 (MQ=255)                                                                                                                               gCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATccc                     >  6:301385/1‑149 (MQ=255)                                                                                                                                      cTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCcggctcgg              <  5:301385/149‑1 (MQ=255)                                                                                                                                          cgcgcATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACT‑GCCATTATCCCGGCTCGGctggc         <  2:161798/149‑1 (MQ=255)                                                                                                                                           gcgcATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCTCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGctggc         <  2:97215/149‑1 (MQ=255)                                                                                                                                                tgggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGctggcctggc    <  4:308759‑M2/145‑1 (MQ=255)                                                                                                                                                tgggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGctggcctggc    <  1:275112‑M2/145‑1 (MQ=255)                                                                                                                                                 gggTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGctggcctgg     >  8:339060‑M2/4‑147 (MQ=255)                                                                                                                                                   gTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAg  >  5:280205‑M2/2‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCAGGCCCCCCAGCATGCCGCCATGCTCGCTGACCCAGCGTCGCAGCCACGGTTGCAACAGGGGCACCAGGCCCATGCACAGCACCGGTAGCGCCGTCAGCAAGG‑CCGCCTGCTGGTAACCCAGGCCGGTGCTGGCGCGCATGGGTTCGAGTAACGGGCCGATACTGGTCAGGATCGGCCGCAGGTTCAACGCCAGCAGGATCACCAGCAACAGGTTCAGTACAGCGCTCATTGTGAGTCGGTTCTCTTGTAACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAG  >  NC_002947/4281191‑4281483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.