| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4422374 = | 52 (0.920) | 3 (0.060) | 3/244 | NT | 6.3% | coding (454/678 nt) | PP_3913 | hypothetical protein |
| ? | NC_002947 | 4422426 = | 40 (0.750) | coding (506/678 nt) | PP_3913 | hypothetical protein | |||||
GCCAATAGCCTGGATGGTTGGTACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCA > NC_002947/4422226‑4422502 | atcgtcagcgccttgttgcgtgctgccgacccatcgaccgagataccatcgatccgcaggaactcgcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtg > 1:274132‑M1/149‑149 (MQ=255) cgtcagcgccttgttgcgtgctgccgacccatcgaccgagataccatcgatccgcaggaactcgcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCt < 6:229446‑M1/3‑1 (MQ=255) agcgccttgttgcgtgctgccgacccatcgaccgagataccatcgatccgcaggaactcgcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCTg > 5:35061‑M1/143‑146 (MQ=255) agcgccttgttgcgtgctgccgacccatcgaccgagataccatcgatccgcaggaactcgcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCTg < 6:35061‑M1/4‑1 (MQ=255) cTGGATGGTTGGTACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGc < 7:166717/149‑1 (MQ=255) gATGGTTGGTACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGt > 7:91687/1‑148 (MQ=255) gATGGTTGGTACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGt < 2:31658/148‑1 (MQ=255) ttggtACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCAc < 4:162893/149‑1 (MQ=255) ggtACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACg > 5:339572/1‑148 (MQ=255) ccATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGc > 6:236011/1‑132 (MQ=255) ccATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGc < 5:236011/132‑1 (MQ=255) gAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTgg > 7:5621/1‑149 (MQ=255) aaCAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGc < 8:329685/149‑1 (MQ=255) aaaGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTgc > 4:316802/1‑149 (MQ=255) aagaagAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTgcg > 4:358249/1‑149 (MQ=255) aagaGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCtt < 7:35622/149‑1 (MQ=255) agGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGc < 7:49471/149‑1 (MQ=255) gagagGGATGCTGTGGCAACTGGTCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGca < 8:91687/149‑1 (MQ=255) gagagGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCa > 1:84874/1‑146 (MQ=255) gagagGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCa < 2:84874/146‑1 (MQ=255) agagGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGca > 6:76162/1‑148 (MQ=255) caggaactcgcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAg > 6:176405‑M1/93‑149 (MQ=255) gcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGa > 2:291030‑M1/84‑141 (MQ=255) gcgcactgacgacttgagctcagccagttgggcaagcaacgccttgcgcgtttcctcggcagcttccatgtagtcggtcttgtGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGa < 1:291030‑M1/58‑1 (MQ=255) cccATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTTGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGcc > 7:24263/1‑147 (MQ=255) cccATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGCCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGcc > 5:50677/1‑147 (MQ=255) cATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAgg < 5:105802/149‑1 (MQ=255) cATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAg > 7:153297/1‑148 (MQ=255) aTGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAgg > 7:84257/1‑148 (MQ=255) gATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATgg > 5:259492/1‑134 (MQ=255) gATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATgg < 6:259492/134‑1 (MQ=255) aTTTCCTTTGGCCCACTTGCTGATACTGGTGATGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGaaa < 7:249484/148‑1 (MQ=255) tCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAAcgc < 2:215421/148‑1 (MQ=255) cTTTGGCTCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAAc > 5:51829/1‑80 (MQ=255) cTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAAc < 6:51829/80‑1 (MQ=255) tttGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACgcgc > 1:45891/1‑147 (MQ=255) cccACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGt < 5:76162/149‑1 (MQ=255) ccACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCGCGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGtt > 1:108270/1‑149 (MQ=255) ccACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGa < 1:270903/109‑1 (MQ=255) ccACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGa > 2:270903/1‑109 (MQ=255) ccACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGtt < 8:153297/149‑1 (MQ=255) ttGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAAcgc < 7:271049/135‑1 (MQ=255) ttGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAAcgc > 8:271049/1‑135 (MQ=255) ttGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGttgctt > 2:118820/1‑149 (MQ=255) aCTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACt > 2:259981/1‑149 (MQ=255) cTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACt < 6:285734/148‑1 (MQ=255) gTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTgg < 3:358249/147‑1 (MQ=255) gAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCt > 3:32833/1‑147 (MQ=255) ggTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGc < 8:84257/149‑1 (MQ=255) ttGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCt > 6:298365/1‑148 (MQ=255) gCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAgtc < 5:298365/149‑1 (MQ=255) aTTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAgtcgt < 1:259981/149‑1 (MQ=255) ttGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAgtcgt > 5:96781/1‑148 (MQ=255) gCGATGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAATAATTGGCTGCGCTTCGCCAGCACAAGACCTACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCa < 8:24263/148‑1 (MQ=255) gCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCa < 1:118820/148‑1 (MQ=255) gCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCa < 2:45891/148‑1 (MQ=255) gCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCa < 6:339572/148‑1 (MQ=255) gAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGc < 3:98369/135‑1 (MQ=255) gAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGc > 4:98369/1‑135 (MQ=255) | GCCAATAGCCTGGATGGTTGGTACTGCCATCTGGCGGAACAAAGAAGAGGCAGAGAGGGATGCTGTGGCAACTGGGCTGCCCATGATTTCCTTTGGCCCACTTGCTGATACTGGTGAGGTTGAGGCATTGCGAGGTGCGTATCTGCGCGCTGGCGAGCGTGAGCACGAACTGCGCAAAGAATTGGCTGCGCTTCGCCAGCACAAGACCGACTACATGGAAGCTGCCGAGGAAACGCGCAAGGCGTTGCTTGCCCAACTGGCTGAGCTCAAGTCGTCA > NC_002947/4422226‑4422502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |