New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4902847	37 (0.650)	4 (0.080)	4/226	NT	14.8%	intergenic (+33/+86)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
	?	NC_002947	= 4902910	14 (0.280)					intergenic (+96/+23)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit

CCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC  >  NC_002947/4902705‑4902993                                                                                                                                               |                                                                                                                                                   ccATTGCCGAATCGCTAGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGcc                                                                                                                                              <  4:242141/149‑1 (MQ=255)  cATTGCCGAATCGCTGGTGCGCATGGGTTTGGGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCg                                                                                                                                             >  4:88158/1‑149 (MQ=255)  cATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCg                                                                                                                                             >  4:114568/1‑149 (MQ=255)   aTTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGc                                                                                                                                            >  4:114444/1‑149 (MQ=255)       ccGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTcc                                                                                                                                         <  3:231775/148‑1 (MQ=255)           aTCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCg                                                                                                                                    <  3:114444/149‑1 (MQ=255)           aTCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCg                                                                                                                                    <  3:94019/149‑1 (MQ=255)               cTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTAc                                                                                                                                      >  2:202409/1‑143 (MQ=255)               cTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCCGCCTCTTCGCGGCTGATGCCGCTCCTAc                                                                                                                                      <  1:202409/143‑1 (MQ=255)                tGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGAAGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTAGCGGCTGATGCCGCTCCTACCGGAc                                                                                                                                 >  5:230027/1‑147 (MQ=255)                  gTGCGCATGGGTTTGGGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCa                                                                                                                               <  3:88158/147‑1 (MQ=255)                  gTGCGCATGGGTTTGAGCACGTCCATAGTGCGCACCTATGCGAGGCAACGGGCGTAGAAAGTGGTGGTCTGGCCTATGCGCTTCGTCCGCTAGTGATCATTCGCCTGTACAGGCGTCTTCGGGGGTGATGCGGCTCCTACCGGACCAGc                                                                                                                             <  3:337647/149‑1 (MQ=255)                             tttGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGaa                                                                                                                  >  3:327481/1‑149 (MQ=255)                                gAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATAc                                                                                                               >  4:341832/1‑149 (MQ=255)                                    aCGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTg                                                                                                           <  1:231704/149‑1 (MQ=255)                                      gTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttgtgct                                                                                                         >  3:120540‑M1/1‑106 (MQ=255)                                           ccatGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATa                                                                                                                >  4:301924/4‑137 (MQ=255)                                           ccatGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATa                                                                                                                <  3:301924/134‑1 (MQ=255)                                              tGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttgtgctggtccggt                                                                                                 <  4:103829‑M1/149‑52 (MQ=255)                                                cgcACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAg                                                                                               >  1:72214/1‑149 (MQ=255)                                                   aCCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAg                                                                                            >  4:75137/1‑149 (MQ=255)                                                     cTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTCCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGa                                                                                                                                  <  1:245970/109‑1 (MQ=255)                                                     cTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTCCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGa                                                                                                                                  >  2:245970/1‑109 (MQ=255)                                                        tGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCgg                                                                                         <  4:327481/147‑1 (MQ=255)                                                          cGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttgtgctggtccggtaggagcggcat                                                                                      <  6:336983‑M1/148‑63 (MQ=255)                                                          cGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCtt                                                                                      <  3:114568/148‑1 (MQ=255)                                                             cGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttgtgctggtccggtaggagcggcatcagc                                                                                  <  4:120540‑M1/149‑67 (MQ=255)                                                                         agaaAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGaa                                                                                                                  >  8:286358/1‑105 (MQ=255)                                                                         agaaAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGaa                                                                                                                  <  7:286358/105‑1 (MQ=255)                                                                           aacgtggtgGGAGGGCCGATGCGCTTCGCCCGCTAGACATCCTCCGCCTGTACCGCCCTCTTCGCGGCTGAGCCCGCGCCTACCGCACCACCACAAGCCTCAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAggccgg                                                                    <  4:282191/146‑1 (MQ=255)                                                                             aGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGGCCAGCCCAAGCCTGCATACCGTGGGGTGCGCGTAGGCGCGGCTTTTGCCGCGAAGCggccggcc                                                                  >  1:146320/1‑149 (MQ=255)                                                                                                 gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCttt                                                                                     >  4:214158/1‑110 (MQ=255)                                                                                                 gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCttt                                                                                     <  3:214158/110‑1 (MQ=255)                                                                                                                gacccTTCGCGTTTCCGGGCCTTTGCGGGGGTTAGGCCGCTCCTCCCGCCCCCCCACACGCCTTAATCCGGGGGGGTCCGCTTTGGTGGGGTTTTCGCCGCTATGTGCCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCa                                <  2:72214/145‑1 (MQ=255)                                                                                                                 aTCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACt                              >  7:239126/1‑149 (MQ=255)                                                                                                                             tACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCGTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGcc                    >  7:334/1‑147 (MQ=255)                                                                                                                                cGGCCTCTCCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGt                                                                                                 <  7:137586/67‑1 (MQ=255)                                                                                                                                cGGCCTCTCCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGt                                                                                                 >  8:137586/1‑67 (MQ=255)                                                                                                                                  gCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAgg                      >  5:296395/1‑140 (MQ=255)                                                                                                                                     tctTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttg                                                                                                             <  1:65495‑M1/50‑40 (MQ=255)                                                                                                                                     tctTCGCGGCTaaagccgctcctacgaggaccccacggtattcaggcttg                                                                                                             >  2:65495‑M1/1‑11 (MQ=255)                                                                                                                                         cgcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCaa                  <  1:228991/137‑1 (MQ=255)                                                                                                                                         cgcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCaa                  >  2:228991/1‑137 (MQ=255)                                                                                                                                             gCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcg  <  4:120540‑M2/149‑84 (MQ=255)                                                                                                                                               |                                                                                                                                                   CCATTGCCGAATCGCTGGTGCGCATGGGTTTGAGCACGTCCAAAGTGCGCACCTATGCGACGCCACGGGCGAAGAAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCC  >  NC_002947/4902705‑4902993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.