| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4902847 | 37 (0.650) | 4 (0.080) | 4/226 | NT | 14.8% | intergenic (+33/+86) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit |
| ? | NC_002947 | = 4902910 | 14 (0.280) | intergenic (+96/+23) | PP_4310/PP_4311 | hydantoin racemase/D‑amino acid dehydrogenase small subunit | |||||
AAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGGTC > NC_002947/4902779‑4903056 | aacgtggtgGGAGGGCCGATGCGCTTCGCCCGCTAGACATCCTCCGCCTGTACCGCCCTCTTCGCGGCTGAGCCCGCGCCTACCGCACCACCACAAGCCTCAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAggccgg < 4:282191/146‑1 (MQ=255) aGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGGCCAGCCCAAGCCTGCATACCGTGGGGTGCGCGTAGGCGCGGCTTTTGCCGCGAAGCggccggcc > 1:146320/1‑149 (MQ=255) gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCttt > 4:214158/1‑110 (MQ=255) gcTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCttt < 3:214158/110‑1 (MQ=255) gacccTTCGCGTTTCCGGGCCTTTGCGGGGGTTAGGCCGCTCCTCCCGCCCCCCCACACGCCTTAATCCGGGGGGGTCCGCTTTGGTGGGGTTTTCGCCGCTATGTGCCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCa < 2:72214/145‑1 (MQ=255) aTCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACt > 7:239126/1‑149 (MQ=255) tACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCGTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGcc > 7:334/1‑147 (MQ=255) gCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAgg > 5:296395/1‑140 (MQ=255) cgcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCaa < 1:228991/137‑1 (MQ=255) cgcgGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCaa > 2:228991/1‑137 (MQ=255) gCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcg < 4:120540‑M2/149‑84 (MQ=255) aTGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcg < 6:336983‑M2/148‑87 (MQ=255) ccGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGcc > 4:97586/1‑149 (MQ=255) aCCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcgcataggtgcgca < 4:103829‑M2/149‑99 (MQ=255) aCCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGtt > 8:100406/1‑148 (MQ=255) ggACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGc > 8:278909/1‑149 (MQ=255) gACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGc > 2:258657/1‑148 (MQ=255) aCCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGc < 7:278909/147‑1 (MQ=255) aGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaagaggccggtacaggcgaaggatctctagcggccgaagcgcatcggccagcccaccactttcttcgcccgtggcgtcgcataggtgcgcactttggac > 3:120540‑M2/1‑43 (MQ=255) aGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAg > 2:208873/1‑149 (MQ=255) caAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaaga > 2:65495‑M2/1‑39 (MQ=255) caAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTagccgcgaaga < 1:65495‑M2/50‑12 (MQ=255) cTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTa > 1:296183/1‑149 (MQ=255) gTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGATGCGGTACACTGTCCCACCTa > 4:121730/1‑149 (MQ=255) gCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCcgg > 1:29729/1‑149 (MQ=255) tttAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAGCGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCcggtc > 2:238015/1‑149 (MQ=255) | AAAGTGGTGGGCTGGCCGATGCGCTTCGGCCGCTAGAGATCCTTCGCCTGTACCGGCCTCTTCGCGGCTGATGCCGCTCCTACCGGACCAGCACAAGCCTGAATACCGTGGGGTCCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGCCCGCTTAACGCATCATCCTGGCCAAACGCTGCGCACTGCCACAGGCCAAGGTGAACCCTAACGCCCCATGCCCCAGGTTCAGCCACAGGTTGCGGTACACTGTCCCACCTATGATCGGCACCCCGGTC > NC_002947/4902779‑4903056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |