New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5000321 = | 49 (0.860) | 4 (0.070) | 4/246 | NT | 7.7% | coding (1174/1383 nt) | PP_4407 | gamma‑aminobutyrate transporter |
? | NC_002947 | 5000404 = | 50 (0.930) | coding (1257/1383 nt) | PP_4407 | gamma‑aminobutyrate transporter |
CTGACCGTGCACTTTGTCAGTGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCGGGG > NC_002947/5000177‑5000467 | gcgcgtggccagcgctgtcatgcatcacgttcgtgggctaacaccgcgcttgacgccagccgctggcgcatcaggaagtaccccgccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGc < 5:228720‑M1/5‑1 (MQ=255) cgcgtggccagcgctgtcatgcatcacgttcgtgggctaacaccgcgcttgacgccagccgctggcgcatcaggaagtaccccgccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGc > 6:134055‑M1/144‑148 (MQ=255) atcGTGCACTTTGTCAGTGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCtt < 3:141820/147‑1 (MQ=255) cGTTCACTTTGTCAGTGGCCGCGACCTGTTCATGACCTTGGACAAGAGTACCGTCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTcc < 8:160887/149‑1 (MQ=255) tGTCAGTGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTgg < 4:184215/148‑1 (MQ=255) gTGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTc < 1:148904/149‑1 (MQ=255) tGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCt < 4:3826/140‑1 (MQ=255) tGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCt > 3:3826/1‑140 (MQ=255) gcggcgACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTccc < 6:150389/148‑1 (MQ=255) cggcgACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTcccc > 8:235216/1‑148 (MQ=255) gcgACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTa > 7:333273/1‑148 (MQ=255) tGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCAAGTGGCCATGCGCATCAAAACCCGCCCCGACGCGGTCGCCCCAAACGCCTTCCCAGCCTCGCTGTTCCCCTACAcc > 4:43428/1‑146 (MQ=255) ttCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAatat > 5:18506/1‑149 (MQ=255) cATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATc < 5:33175/148‑1 (MQ=255) cATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATc < 1:159169/148‑1 (MQ=255) aTGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGTTCGTATTGATCTTCATAATCATCTCCCAAGTGTCCATGAGAATAAAAACACGCCACTAAGCGGTCTCCCCAAACCCCTTCCGTTCCTGGCTTTTCACCTACACCAATATCAt > 8:118003/1‑149 (MQ=255) aTGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCAt > 2:307146/1‑149 (MQ=255) aTGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCAt > 2:307997/1‑149 (MQ=255) aTGACCTTGGCCAAGAGTACCGGCAGCATGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCa < 8:15654/148‑1 (MQ=255) tGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCAtt < 1:307997/149‑1 (MQ=255) tGACCTAGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATAATCATCGCCCACGTGGCCATGCGCATAAAAACCCGCCACGAAGCGGTCGCCACAAACGCCTTCCGTGCCTCGCTGTTCCCCTACACCAATATCAtt > 8:31622/1‑149 (MQ=255) aCCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTgc > 1:204849/1‑149 (MQ=255) aCCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTgc < 4:204989/149‑1 (MQ=255) aCCGTGGCCACGATCACCGGCAGCCTGGTCATGGGCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTgc < 8:333273/149‑1 (MQ=255) cAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAACACCCGCCCCGACGCGGTCGACCCACACGCCTTCCGTGCCTGGCTGTGCCCCTACACGAATATCATTGCGCTGTTCg > 6:300080/1‑149 (MQ=255) aaGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGc > 6:57851/1‑149 (MQ=255) gccagccgctggcgcatcaggaagtaccccgccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCt < 6:113714‑M1/59‑1 (MQ=255) agccgctggcgcatcaggaagtaccccgccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTgg < 8:240680‑M1/61‑1 (MQ=255) gCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCa < 1:307146/149‑1 (MQ=255) gCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCa < 5:325087/149‑1 (MQ=255) gCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCa < 6:18506/149‑1 (MQ=255) ggccaaggTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTgg < 6:223418/140‑1 (MQ=255) aTGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCAc > 8:122924/1‑149 (MQ=255) ggTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCAcc > 3:139765/1‑148 (MQ=255) gTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCa < 7:235216/149‑1 (MQ=255) gTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACGCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGc < 4:139765/149‑1 (MQ=255) ggATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTc > 5:145751/1‑149 (MQ=255) ccccgccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTc > 5:113714‑M1/65‑148 (MQ=255) aTCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCtt < 3:35460/71‑1 (MQ=255) aTCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCtt > 4:35460/1‑71 (MQ=255) cTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGAcc > 2:240748/1‑149 (MQ=255) ccaccaccagcagtaccgtcagcaccgtgaaccagaattggaaacgcgatgccgggtcgAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCg > 7:240680‑M1/60‑149 (MQ=255) catcatcatCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGAccc < 1:240748/147‑1 (MQ=255) atcatcGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCAt < 6:267963/148‑1 (MQ=255) atcGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATcgcg > 3:178422/1‑149 (MQ=255) cccACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTc < 6:145751/149‑1 (MQ=255) cgaTGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATGATTGCGCTGTTAGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTg < 7:31622/146‑1 (MQ=255) gcATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACg > 8:24727/1‑149 (MQ=255) gcATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACg < 5:57851/149‑1 (MQ=255) aTCAAAACCCGCCACGAAGCGGTCGCCCCAAAGGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGt < 7:118003/149‑1 (MQ=255) cAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGc > 6:105520/1‑149 (MQ=255) aaCCCGCCACGATGCGGTCGCCCCAAACTCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTGCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGa < 3:43428/149‑1 (MQ=255) aaCCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGa < 2:204849/149‑1 (MQ=255) cACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTAct > 4:145126/1‑149 (MQ=255) aCGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTActg > 2:162397/1‑149 (MQ=255) ccccAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCg > 6:270760/1‑149 (MQ=255) cccAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCATGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCgg > 6:27118/1‑149 (MQ=255) ccAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCggg < 4:178422/149‑1 (MQ=255) ccAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCggg < 5:105520/149‑1 (MQ=255) aaaCGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCgggg > 6:314412/1‑148 (MQ=255) | CTGACCGTGCACTTTGTCAGTGGCGGCGACCTGTTCATGACCTTGGCCAAGAGTACCGGCAGCCTGGTCATGGTCGTATGGATCTTCATCATCATCGCCCACGTGGCCATGCGCATCAAAACCCGCCACGAAGCGGTCGCCCCAAACGCCTTCCGTGCCTGGCTGTTCCCCTACACCAATATCATTGCGCTGTTCGCCTTGCTGGCAGTCATCGGCACCCAGGCGTTCGACCCGGCATCGCGTTTCCAATTCTGGTTCACGGTGCTGACGGTACTGCTGGTGGTGGCGGGG > NC_002947/5000177‑5000467 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |