New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5170763 | 45 (0.790) | 3 (0.050) | 3/252 | NT | 6.2% | coding (992/1308 nt) | PP_4548 | oxidoreductase |
? | NC_002947 | = 5170795 | 47 (0.860) | coding (1024/1308 nt) | PP_4548 | oxidoreductase |
AACCCGCAGGACCTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCC > NC_002947/5170615‑5170908 | aaCCCGCAGGACCTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGA < 6:215741‑M1/149‑1 (MQ=255) aCCCGCAGGACCTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGaa > 4:151403/1‑149 (MQ=255) cacGCATGACCAGCCCGAGTACGACTGCCGCTTCGTCCACCACTACTACAGCATGACCCCACACACCAGCCACCTTTTCGCCTGCGGCGCCAACTACTCAGGCAAGGATTCACGTGACATCGAATGCGAATAGAG‑CACCTGCAACGaaa > 8:113322/3‑148 (MQ=255) ccGCAGGACCTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACGGCCTGACGTCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAAc < 7:113322/148‑1 (MQ=255) cTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTCCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTccc > 8:290126/1‑149 (MQ=255) ggTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACAGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCAt > 3:50593/1‑149 (MQ=255) gtACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTg > 6:193045/1‑148 (MQ=255) cGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGACCGCACCTTCCCGGCATTGAAg < 1:57601/148‑1 (MQ=255) cGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAg < 7:57088/148‑1 (MQ=255) cTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAggggg > 1:92075/1‑149 (MQ=255) ccGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGc > 3:170811/1‑149 (MQ=255) ccGCTTCGTCCTCGACTACTACCGCCTGACAGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGt < 4:50593/147‑1 (MQ=255) cGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtc > 4:315224‑M2/1‑146 (MQ=255) gTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcg > 3:151403‑M2/1‑145 (MQ=255) tCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCTAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAtcggcacccccttcaatgccgggaaggtgcgttcgat < 2:31274‑M1/149‑38 (MQ=255) cTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGtt > 3:55609/1‑149 (MQ=255) gACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCCTGCATCGAtcggcacccccttcaatgccgggaaggtgcgttcgatgcag < 1:89105‑M1/149‑42 (MQ=255) actactACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAtcggcacccccttcaatgccgggaaggtgcgttcgatgcaggg < 2:76525‑M1/149‑44 (MQ=255) actactACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAg > 2:276085/1‑149 (MQ=255) ctacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAATGATTCACGGTTCATCGTAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTg < 3:74358/147‑1 (MQ=255) ctacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGa < 7:290126/149‑1 (MQ=255) tacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAg > 3:342590/1‑149 (MQ=255) ccTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTgcg < 4:125697/149‑1 (MQ=255) tGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTgcgc > 1:115151/1‑148 (MQ=255) ggCCGTCAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCATGCAAGGATTCACGGGACATCGAAGGCGAATTTCG‑CCCCTGCATGGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATgg < 2:208784/149‑1 (MQ=255) cGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCa > 4:331096/1‑149 (MQ=255) gACAAGCGCCTGCTGTTCGGCGGCGACGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCAt > 1:253783/1‑149 (MQ=255) aCAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATc < 4:55609/149‑1 (MQ=255) cAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCg < 2:92075/149‑1 (MQ=255) aGCGCCTGCTGTTCGGCGGCGGCGCCGACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTg < 3:237273/149‑1 (MQ=255) ccTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTc > 3:80075/1‑148 (MQ=255) tgctgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGt > 7:141908/1‑145 (MQ=255) tgctgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGt < 8:141908/145‑1 (MQ=255) tgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGAG‑CAACTGCATCGAACGAACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑AAAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCg > 7:205261/1‑148 (MQ=255) ttCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCAt > 2:105217/1‑149 (MQ=255) ttCGGCGGCGACGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCAt < 2:253783/149‑1 (MQ=255) ggcggcggcGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATccc < 4:170811/149‑1 (MQ=255) gcggcgCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAg > 4:299000/1‑149 (MQ=255) cgcCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTgg < 5:193045/149‑1 (MQ=255) actactCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAg > 2:274510/1‑149 (MQ=255) atactTAGGGAATGATTCACGGGTCATCGTAGGGGAATTGCG‑GCCCTTGATAGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTTCCCTGTGGAGCTGCGCCATGGGCATCGTTGTCAACCGCATCCCGCAGCTGGGCAAg < 1:276085/148‑1 (MQ=255) ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAAcc < 1:62010/125‑1 (MQ=255) ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAAcc > 2:62010/1‑125 (MQ=255) ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGt < 1:105217/149‑1 (MQ=255) tCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGt < 5:342368/116‑1 (MQ=255) tCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGt > 6:342368/1‑116 (MQ=255) aGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGGAGCTTGGCCAGCTgcgg < 2:115151/148‑4 (MQ=255) aaGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACaa > 4:49969/1‑149 (MQ=255) aGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAAc < 3:331096/149‑1 (MQ=255) aCGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTgg > 3:49512/1‑148 (MQ=255) aTCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCa < 1:274510/149‑1 (MQ=255) tCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAg < 4:49512/149‑1 (MQ=255) cccTGCATCTAAAGCAACTTCCCTTCATTTAAGTGGGTGCCGATCGAGTT‑CCAGTGTAGCTGCGCCATGGGCATCGTGGTCAACCGCAACCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGggcatgg < 8:205261/149‑1 (MQ=255) cccTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcaggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagt < 2:76525‑M2/149‑107 (MQ=255) cTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcagggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtc < 1:89105‑M2/149‑109 (MQ=255) cATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCAtt < 3:49969/148‑1 (MQ=255) aTCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcaggggcgcaattcgccttcgatgtcccgtgaatcctagcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtcgagga < 2:31274‑M2/149‑113 (MQ=255) tCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGcc > 3:13732/1‑149 (MQ=255) cgatcggcacccccttcaatgccgggaaggtgcgttcgatgcaggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtcgaggac > 3:151403‑M1/1‑3 (MQ=255) gatcggcacccccttcaatgccgggaaggtgcgttcgatgcaggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtcgaggacg > 4:315224‑M1/1‑2 (MQ=255) | AACCCGCAGGACCTGGCGGTGTACGACTGCCGCTTCGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCG‑CCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCC > NC_002947/5170615‑5170908 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |