New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5170763	45 (0.790)	3 (0.050)	3/252	NT	6.2%	coding (992/1308 nt)	PP_4548	oxidoreductase
	?	NC_002947	= 5170795	47 (0.860)					coding (1024/1308 nt)	PP_4548	oxidoreductase

CGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGAAGC  >  NC_002947/5170650‑5170943                                                                                                                                                  |                                                                                                                                                      cGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtc                                                                                                                                                     >  4:315224‑M2/1‑146 (MQ=255)  gTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcg                                                                                                                                                    >  3:151403‑M2/1‑145 (MQ=255)     cTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGtt                                                                                                                                                >  3:55609/1‑149 (MQ=255)         actactACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAg                                                                                                                                           >  2:276085/1‑149 (MQ=255)             ctacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAATGATTCACGGTTCATCGTAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTg                                                                                                                                         <  3:74358/147‑1 (MQ=255)             ctacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGa                                                                                                                                       <  7:290126/149‑1 (MQ=255)              tacCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAg                                                                                                                                      >  3:342590/1‑149 (MQ=255)                   ccTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTgcg                                                                                                                                 <  4:125697/149‑1 (MQ=255)                     tGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTgcgc                                                                                                                                >  1:115151/1‑148 (MQ=255)                         ggCCGTCAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCATGCAAGGATTCACGGGACATCGAAGGCGAATTTCGCCCCTGCATGGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATgg                                                                                                                           <  2:208784/149‑1 (MQ=255)                            cGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCa                                                                                                                        >  4:331096/1‑149 (MQ=255)                             gACAAGCGCCTGCTGTTCGGCGGCGACGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCAt                                                                                                                       >  1:253783/1‑149 (MQ=255)                              aCAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATc                                                                                                                      <  4:55609/149‑1 (MQ=255)                               cAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCg                                                                                                                     <  2:92075/149‑1 (MQ=255)                                 aGCGCCTGCTGTTCGGCGGCGGCGCCGACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTg                                                                                                                   <  3:237273/149‑1 (MQ=255)                                     ccTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTc                                                                                                                >  3:80075/1‑148 (MQ=255)                                       tgctgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGt                                                                                                                 <  8:141908/145‑1 (MQ=255)                                       tgctgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGt                                                                                                                 >  7:141908/1‑145 (MQ=255)                                          tgTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGAGCAACTGCATCGAACGAACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑AAAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCg                                                                                                           >  7:205261/1‑148 (MQ=255)                                            ttCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCAt                                                                                                        >  2:105217/1‑149 (MQ=255)                                            ttCGGCGGCGACGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCAt                                                                                                        <  2:253783/149‑1 (MQ=255)                                               ggcggcggcGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATccc                                                                                                     <  4:170811/149‑1 (MQ=255)                                                   gcggcgCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAg                                                                                                 >  4:299000/1‑149 (MQ=255)                                                       cgcCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTgg                                                                                             <  5:193045/149‑1 (MQ=255)                                                            actactCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAg                                                                                        >  2:274510/1‑149 (MQ=255)                                                             atactTAGGGAATGATTCACGGGTCATCGTAGGGGAATTGCGGCCCTTGATAGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTTCCCTGTGGAGCTGCGCCATGGGCATCGTTGTCAACCGCATCCCGCAGCTGGGCAAg                                                                                        <  1:276085/148‑1 (MQ=255)                                                                ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAAcc                                                                                                            <  1:62010/125‑1 (MQ=255)                                                                ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAAcc                                                                                                            >  2:62010/1‑125 (MQ=255)                                                                ctCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGt                                                                                    <  1:105217/149‑1 (MQ=255)                                                                 tCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGt                                                                                                                    <  5:342368/116‑1 (MQ=255)                                                                 tCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGt                                                                                                                    >  6:342368/1‑116 (MQ=255)                                                                   aGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGGAGCTTGGCCAGCTgcgg                                                                                  <  2:115151/148‑4 (MQ=255)                                                                       aaGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACaa                                                                             >  4:49969/1‑149 (MQ=255)                                                                        aGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAAc                                                                            <  3:331096/149‑1 (MQ=255)                                                                               aCGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTgg                                                                      >  3:49512/1‑148 (MQ=255)                                                                                      aTCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCa                                                              <  1:274510/149‑1 (MQ=255)                                                                                       tCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAg                                                             <  4:49512/149‑1 (MQ=255)                                                                                                        cccTGCATCTAAAGCAACTTCCCTTCATTTAAGTGGGTGCCGATCGAGTT‑CCAGTGTAGCTGCGCCATGGGCATCGTGGTCAACCGCAACCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGggcatgg                                            <  8:205261/149‑1 (MQ=255)                                                                                                        cccTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcaggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagt                                             <  2:76525‑M2/149‑107 (MQ=255)                                                                                                          cTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcagggggcgcaattcgccttcgatgtcccgtgaatccttgcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtc                                           <  1:89105‑M2/149‑109 (MQ=255)                                                                                                             cATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCAtt                                        <  3:49969/148‑1 (MQ=255)                                                                                                              aTCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGAtcgatgcaggggcgcaattcgccttcgatgtcccgtgaatcctagcctgagtagttggcgccgccgccgaacagcaggcgcttgtcggccgtcaggcggtagtagtcgagga                                       <  2:31274‑M2/149‑113 (MQ=255)                                                                                                               tCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGcc                                     >  3:13732/1‑149 (MQ=255)                                                                                                                     gCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGc                                                                                           >  4:314281/1‑89 (MQ=255)                                                                                                                     gCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGc                                                                                           <  3:314281/89‑1 (MQ=255)                                                                                                                     gCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGc                               >  1:135739/1‑149 (MQ=255)                                                                                                                            cccGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCAcatc                         <  2:135739/148‑1 (MQ=255)                                                                                                                              cGGCATTGAAGGGGGTGCCGATCGAGTTGCCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCAcatcat                       >  1:204560/1‑149 (MQ=255)                                                                                                                                  aTTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGc                   >  1:201758/1‑148 (MQ=255)                                                                                                                                        gggggTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCa            >  5:28695/1‑149 (MQ=255)                                                                                                                                           ggTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATgg         <  4:13732/149‑1 (MQ=255)                                                                                                                                           ggTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATgg         <  4:342590/149‑1 (MQ=255)                                                                                                                                            gTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGc        <  4:80075/149‑1 (MQ=255)                                                                                                                                                 gATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGAAg   >  1:191136/1‑149 (MQ=255)                                                                                                                                                 gATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGAAg   >  4:128945/1‑149 (MQ=255)                                                                                                                                                  aTCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGaa    >  4:28970/1‑147 (MQ=255)                                                                                                                                                  aTCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGAAGc  <  2:201758/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGTCCTCGACTACTACCGCCTGACGGCCGACAAGCGCCTGCTGTTCGGCGGCGGCGCCAACTACTCAGGCAAGGATTCACGGGACATCGAAGGCGAATTGCGCCCCTGCATCGAACGCACCTTCCCGGCATTGAAGGGGGTGCCGATCGAGTT‑CCAGTGGAGCTGCGCCATGGGCATCGTGGTCAACCGCATCCCGCAGCTGGGCAAGCTGTCGGACAACGTGTGGTACTGCCAGGGTTACTCGGGGCATGGCATTGCCACCAGCCACATCATGGGCGAGATCATGGCCGAAGC  >  NC_002947/5170650‑5170943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.