New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5233410 =	44 (0.780)	6 (0.110)	6/246	NT	12.0%	coding (274/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5233446 =	46 (0.860)					coding (310/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor

TGGCCCAGGACACCTACATGCGCCTGCTCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGC  >  NC_002947/5233264‑5233556                                                                                                                                                   |                                                                                                                                                   agcgaaatgcccagttcgcgagcgatttcgccttggcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTc                                                                                                                                                  >  3:52603‑M1/147‑149 (MQ=255)      cAGGACACCTACATGCGCCTGCTCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGcaca                                                                                                                                             <  1:176872/149‑1 (MQ=255)      cAGGACACCTACATGCGCCTGCTCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGcaca                                                                                                                                             <  2:186054/149‑1 (MQ=255)              cTACCTGCGCCTGCTCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCgg                                                                                                                                     <  8:55154/149‑1 (MQ=255)                    gagcgatttcgccttggcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAgg                                                                                                                               <  6:244031‑M1/22‑1 (MQ=255)                        gatttcgccttggcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTcgc                                                                                                                           <  2:364120‑M1/26‑1 (MQ=255)                            tCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCg                                                                                                                       >  6:252355/1‑149 (MQ=255)                              cAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTg                                                                                                                     <  8:42280/149‑1 (MQ=255)                                   ggcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGa                                                                                                                  >  5:244031‑M1/113‑147 (MQ=255)                                   gcgcgAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCg                                                                                                                   <  4:331947/146‑1 (MQ=255)                                   gcgcgAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCg                                                                                                                   >  3:331947/1‑146 (MQ=255)                                    gcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAgg                                                                                                                >  1:364120‑M1/112‑148 (MQ=255)                                         ggCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAg                                                                                                           >  6:318518/1‑148 (MQ=255)                                            gcCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAgg                                                                                                       >  6:106042/1‑149 (MQ=255)                                                   ttGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGatcat                                                                                                <  4:139531/149‑1 (MQ=255)                                                      gtggAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCtt                                                                                             <  2:219758/149‑1 (MQ=255)                                                       tggAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTc                                                                                            <  5:318518/149‑1 (MQ=255)                                                            ccGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCgaga                                                                                        >  8:312067/1‑148 (MQ=255)                                                                 tgcgtTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGc                                                                                  <  7:312067/149‑1 (MQ=255)                                                                     tttCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAgc                                                                              <  5:106042/149‑1 (MQ=255)                                                                         ttGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTc                                                                          >  6:168662/1‑149 (MQ=255)                                                                           gCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGTACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGa                                                                        >  1:78937/1‑149 (MQ=255)                                                                           gCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTc                                                                          <  5:168662/147‑1 (MQ=255)                                                                             ccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGc                                                                                                                    >  7:77149‑M1/71‑103 (MQ=255)                                                                             ccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGc                                                                                                                    <  8:77149‑M1/33‑1 (MQ=255)                                                                                  tAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTg                                                                 >  6:236514/1‑149 (MQ=255)                                                                                    gCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTATCGCTCGACCACTTGc                                                                <  1:152616/148‑1 (MQ=255)                                                                                     ccAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCg                                                                                                                                                 >  8:248433/1‑66 (MQ=255)                                                                                     ccAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCg                                                                                                                                                 <  7:248433/66‑1 (MQ=255)                                                                                         aCGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGca                                                                                                                                               >  5:93768/1‑64 (MQ=255)                                                                                         aCGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGca                                                                                                                                               <  6:93768/64‑1 (MQ=255)                                                                                          cgcgTATTGTGTAACCACTTACGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACgg                                                         >  4:330443/1‑149 (MQ=255)                                                                                           gcgTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGc                                                        <  2:78937/149‑1 (MQ=255)                                                                                              tATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCtt                                                     >  4:221854/1‑149 (MQ=255)                                                                                                  gtgtAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCAc                                                 >  4:173842/1‑149 (MQ=255)                                                                                                     tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTa                                                                                >  8:7580/1‑115 (MQ=255)                                                                                                     tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTa                                                                                <  7:7580/115‑1 (MQ=255)                                                                                                     tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGt                                              <  7:305370/149‑1 (MQ=255)                                                                                                       aCCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGtt                                             <  5:252355/148‑1 (MQ=255)                                                                                                         cACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGt                                          <  3:330443/149‑1 (MQ=255)                                                                                                           cTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAgc                                                                              >  2:178750/1‑111 (MQ=255)                                                                                                                gccgccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAAcgc                                   >  1:12039/1‑149 (MQ=255)                                                                                                                    ccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACg                                                          >  3:5694/1‑122 (MQ=255)                                                                                                                    ccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACg                                                          <  4:5694/122‑1 (MQ=255)                                                                                                                       ggAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTcc                            <  5:236514/149‑1 (MQ=255)                                                                                                                          aCTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTc                                                    <  3:273634/122‑1 (MQ=255)                                                                                                                          aCTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTc                                                    >  4:273634/1‑122 (MQ=255)                                                                                                                              gAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCaaa                                      >  7:288334/1‑132 (MQ=255)                                                                                                                              gAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCaaa                                      <  8:288334/132‑1 (MQ=255)                                                                                                                                    gCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTTGACCAAcggtggaa                              >  3:155465/1‑128 (MQ=255)                                                                                                                                    gCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTTGACCAAcggtggaa                              <  4:155465/134‑7 (MQ=255)                                                                                                                                          cTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACgg         >  6:348010/1‑149 (MQ=255)                                                                                                                                             cAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCt      >  8:185284/1‑149 (MQ=255)                                                                                                                                                gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg   <  3:173842/149‑1 (MQ=255)                                                                                                                                                gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg   <  7:185284/149‑1 (MQ=255)                                                                                                                                                 cgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc  <  3:221854/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TGGCCCAGGACACCTACATGCGCCTGCTCCAGGCGCGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGC  >  NC_002947/5233264‑5233556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.