New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5233410 =	44 (0.780)	6 (0.110)	6/246	NT	12.0%	coding (274/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5233446 =	46 (0.860)					coding (310/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor

CGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCT  >  NC_002947/5233299‑5233591                                                                                                                                                    |                                                                                                                                                    gcccaggccgtcgacctgggccagcaggaaggcgcgtttgaccaacggtggaaggccgtccagcaagtggtcgagcgctagcaatgtctcgaagatgatcgccttctgttcCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAgg                                                                                                                                                     >  1:364120‑M1/112‑148 (MQ=255)      ggCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAg                                                                                                                                                >  6:318518/1‑148 (MQ=255)         gcCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAgg                                                                                                                                            >  6:106042/1‑149 (MQ=255)                ttGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGatcat                                                                                                                                     <  4:139531/149‑1 (MQ=255)                   gtggAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCtt                                                                                                                                  <  2:219758/149‑1 (MQ=255)                    tggAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTc                                                                                                                                 <  5:318518/149‑1 (MQ=255)                         ccGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCgaga                                                                                                                             >  8:312067/1‑148 (MQ=255)                              tgcgtTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGc                                                                                                                       <  7:312067/149‑1 (MQ=255)                                  tttCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAgc                                                                                                                   <  5:106042/149‑1 (MQ=255)                                      ttGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTc                                                                                                               >  6:168662/1‑149 (MQ=255)                                        gCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGTACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGa                                                                                                             >  1:78937/1‑149 (MQ=255)                                        gCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTc                                                                                                               <  5:168662/147‑1 (MQ=255)                                               tAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTg                                                                                                      >  6:236514/1‑149 (MQ=255)                                                 gCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTATCGCTCGACCACTTGc                                                                                                     <  1:152616/148‑1 (MQ=255)                                                       cgcgTATTGTGTAACCACTTACGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACgg                                                                                              >  4:330443/1‑149 (MQ=255)                                                        gcgTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGc                                                                                             <  2:78937/149‑1 (MQ=255)                                                           tATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCtt                                                                                          >  4:221854/1‑149 (MQ=255)                                                               gtgtAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑c                                                                                    >  4:173842/1‑149 (MQ=255)                                                                  tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTa                                                                                                                     >  8:7580/1‑115 (MQ=255)                                                                  tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTa                                                                                                                     <  7:7580/115‑1 (MQ=255)                                                                  tAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGt                                                                                 <  7:305370/149‑1 (MQ=255)                                                                    aCCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGtt                                                                                <  5:252355/148‑1 (MQ=255)                                                                      cACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGt                                                                             <  3:330443/149‑1 (MQ=255)                                                                        cTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAgc                                                                                                                   >  2:178750/1‑111 (MQ=255)                                                                             gccgccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAAcgc                                                                      >  1:12039/1‑149 (MQ=255)                                                                                 ccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACg                                                                                               >  3:5694/1‑122 (MQ=255)                                                                                 ccAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACg                                                                                               <  4:5694/122‑1 (MQ=255)                                                                                    ggAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTcc                                                               <  5:236514/149‑1 (MQ=255)                                                                                       aCTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑c                                                                                        >  4:273634/1‑122 (MQ=255)                                                                                       aCTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑c                                                                                        <  3:273634/122‑1 (MQ=255)                                                                                           gAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCaaa                                                                         <  8:288334/132‑1 (MQ=255)                                                                                           gAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCaaa                                                                         >  7:288334/1‑132 (MQ=255)                                                                                                 gCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTTGACCAAcggtggaa                                                                 <  4:155465/134‑7 (MQ=255)                                                                                                 gCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTTGACCAAcggtggaa                                                                 >  3:155465/1‑128 (MQ=255)                                                                                                       cTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACgg                                            >  6:348010/1‑149 (MQ=255)                                                                                                          cAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCt                                         >  8:185284/1‑149 (MQ=255)                                                                                                             gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg                                      <  7:185284/149‑1 (MQ=255)                                                                                                             gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg                                      <  3:173842/149‑1 (MQ=255)                                                                                                              cgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc                                     <  3:221854/149‑1 (MQ=255)                                                                                                               cctcgcacggcgcgacctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGc                                     >  1:364120‑M2/38‑148 (MQ=255)                                                                                                                 tcgcacggcgcgacctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGcc                                    >  5:244031‑M2/36‑147 (MQ=255)                                                                                                                   gcacggcgcgacctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTgg                                                                              <  8:77149‑M2/70‑1 (MQ=255)                                                                                                                   gcacggcgcgacctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTgg                                                                              >  7:77149‑M2/34‑103 (MQ=255)                                                                                                                   GCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCg                                                                                                              <  8:80017‑M1/73‑1 (MQ=255)                                                                                                                   GCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCg                                                                                                              >  7:80017‑M1/1‑73 (MQ=255)                                                                                                                   GCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGgccagca                                >  2:12039‑M1/1‑146 (MQ=255)                                                                                                                        ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGtt                                                                                >  1:63879/1‑96 (MQ=255)                                                                                                                        ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGtt                                                                                <  2:63879/96‑1 (MQ=255)                                                                                                                        ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca                                <  4:151845/144‑4 (MQ=255)                                                                                                                        ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca                                >  3:151845/1‑141 (MQ=255)                                                                                                                          tCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtc                         >  3:115201/1‑149 (MQ=255)                                                                                                                          gcgacctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtc                         <  2:364120‑M2/123‑1 (MQ=255)                                                                                                                              ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc                     >  4:267536/1‑149 (MQ=255)                                                                                                                              ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc                     >  6:119135/1‑149 (MQ=255)                                                                                                                              cctcttccgggacctgtgcgagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc                     <  6:244031‑M2/127‑1 (MQ=255)                                                                                                                                       cgcgCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTgg            <  5:119135/149‑1 (MQ=255)                                                                                                                                          gcCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTGGGAGCCCTTGGTAAAAACCGCCATAAATCTGTCCCACCTCGACCGCCAGGGGCAAAGCGAAATAGCTAGCGAACTgtg           >  1:294070/1‑147 (MQ=255)                                                                                                                                                 gagGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCt  >  3:52603‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGCGAGGCGCCCCAGTTGGTGGAGCCGCGTGCGTTTCTTGCCACCGTAGCCAAACGCGTATTGTGTAACCACTTCCGCCGCCAGGAACTGGAGCGTGCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTT‑CCA‑CCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCT  >  NC_002947/5233299‑5233591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.