New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 11719	54 (0.950)	5 (0.090)	3/246	NT	9.2%	coding (617/1104 nt)	dnaN	DNA polymerase III subunit beta
	?	NC_002947	= 11774	48 (0.900)					coding (672/1104 nt)	dnaN	DNA polymerase III subunit beta

GCCTGGCGCTTTGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCC  >  NC_002947/11629‑11910                                                                                                                                                   |                                                                                                                                         gCCTGGCGCTTTGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgc                                                                                                                                       >  2:106993‑M2/1‑146 (MQ=255)      gcgcTTTGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgcgcca                                                                                                                                   >  7:153304‑M2/1‑141 (MQ=255)          tttGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCactact                                                                                                                              >  8:342058/1‑149 (MQ=255)            tGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCactact                                                                                                                              <  1:275368/147‑1 (MQ=255)               tCGATGAGGGGGCCGAACGAGCAGGTGGTTGGTCACCAGGTCATGGTGCCGCGTAATGGTATCCTGGAGTTGGCGCGGCTGCTGACCGATCCTGATGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCTCATGCGCGCCACTACTGGTGa                                                                                                                         <  2:272142/149‑1 (MQ=255)               tCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGt                                                                                                                           >  7:140207/1‑147 (MQ=255)                 gATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAg                                                                                                                        <  8:241333/148‑1 (MQ=255)                                   gCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGTCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGc                                                                                                     >  8:181476/1‑149 (MQ=255)                                     aggaggATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCtg                                                                                                   >  6:48565/1‑149 (MQ=255)                                       gaggaTCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCtgg                                                                                                  >  1:51132/1‑148 (MQ=255)                                       gaggaTCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCtgg                                                                                                  <  2:51132/148‑1 (MQ=255)                                            tCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACg                                                                                            >  5:351194/1‑149 (MQ=255)                                              gACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACgg                                                                                           <  6:71853/148‑1 (MQ=255)                                               acacCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGc                                                                                          >  6:158056/1‑148 (MQ=255)                                                cacCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAg                                                                                                                        >  7:299987/1‑117 (MQ=255)                                                cacCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAg                                                                                                                        <  8:299987/117‑1 (MQ=255)                                                   cAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAAtt                                                                                     >  1:78051/1‑149 (MQ=255)                                                    aGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTc                                                                                    <  2:78051/149‑1 (MQ=255)                                                       tCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCg                                                                                 >  3:116957/1‑149 (MQ=255)                                                       tCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCg                                                                                 <  4:116957/149‑1 (MQ=255)                                                         aTCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGa                                                                               >  2:355046/1‑149 (MQ=255)                                                             tGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTAc                                                                           <  7:342058/149‑1 (MQ=255)                                                               ccGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGa                                                                               <  1:325289/143‑1 (MQ=255)                                                               ccGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGATGGGCAAACATCAAAACAGCGCCACAAAAGGTTAGTACACCATTACCTCAAAGCTGGTGGACGACAAAAACACGGAcaaata                                                                         >  2:325289/1‑144 (MQ=255)                                                                    tAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAgcgc                                                                     >  3:43095/1‑148 (MQ=255)                                                                    tAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGcgcg                                                                    <  7:251485/149‑1 (MQ=255)                                                                      aaGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTa                                                                  >  2:357315/1‑149 (MQ=255)                                                                       aGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTATGGGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGt                                                                   >  1:79709/1‑148 (MQ=255)                                                                       aGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTAc                                                                 <  2:79709/149‑1 (MQ=255)                                                                          tATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAgacg                                                                                                   >  4:20097/1‑109 (MQ=255)                                                                               tGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgcgccaactccaggatacctttacgcggcacgatgacctggtgtcgatcctcctgctcgatcggcgcgctcatcgagca                                                          <  8:96670‑M2/148‑81 (MQ=255)                                                                                 gAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCaaa                                                         <  1:357315/147‑1 (MQ=255)                                                                                   gTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgcgccaactccaggatacctttacgcggcacgatgacctggtgtcgatcctcctgctcgatcggcgcgctcctcgagcaaagct                                                     <  6:294651‑M2/149‑86 (MQ=255)                                                                                   gTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgcgccaactccaggatacctttacgcggcacgatgacctggtgtcgatcctcctgctcgatcggcgcgctcatcgagcaaagcg                                                     <  8:308646‑M2/149‑86 (MQ=255)                                                                                      ggCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGGAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGt                                                   <  2:205626/148‑1 (MQ=255)                                                                                      ggCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGt                                                   <  6:351194/148‑1 (MQ=255)                                                                                      ggCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGt                                                   <  7:181476/148‑1 (MQ=255)                                                                                         gcgcCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGAc                                                >  1:147265/1‑148 (MQ=255)                                                                                         gcgcCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGAc                                                >  8:29532/1‑148 (MQ=255)                                                                                            ccTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGc                                            <  5:158056/149‑1 (MQ=255)                                                                                            ccTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGc                                            <  7:29532/149‑1 (MQ=255)                                                                                                  gACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCGTCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGgtcg                                      >  7:75324/1‑149 (MQ=255)                                                                                                   aCCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGc                                                              >  7:174213/1‑124 (MQ=255)                                                                                                   aCCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGc                                                              <  8:174213/124‑1 (MQ=255)                                                                                                   aCCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGgtcgt                                     >  2:11424/1‑149 (MQ=255)                                                                                                     cGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGtcgtcg                                   <  5:48565/149‑1 (MQ=255)                                                                                                      gATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGa                                                 >  6:197848/1‑134 (MQ=255)                                                                                                      gATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGa                                                 <  5:197848/134‑1 (MQ=255)                                                                                                       aTCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGga                                 <  8:140207/149‑1 (MQ=255)                                                                                                             aaGGTCT‑GGTCAGCATCGTGCTTGGCCAGCGGCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGAcc                             <  8:75324/147‑1 (MQ=255)                                                                                                               ggTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCcgcgccaactccaggatacctttacgcggcacgatgacctggtgtcgatcctcctgctcgatcggcgcgctcatcgagcaaagcgccaggcggtgaccgtcggtggatacagc                         >  7:308646‑M2/1‑36 (MQ=255)                                                                                                               ggTAT‑GGGCAGCATCGTGCTGGGCCAGCATCACATCcgcgccaactccaggatacctttacgcggcacgatgacctggtggcgatcctcctgctcgatcggcgcgctcatcgagcaaagcgccaggcggtgaccgtcggtggatacagc                         >  5:294651‑M2/1‑36 (MQ=255)                                                                                                                      gTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGgcgc                    <  4:43095/148‑1 (MQ=255)                                                                                                                      ctCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCt                   <  6:131593/148‑1 (MQ=255)                                                                                                                         aGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCg                >  4:264182/1‑149 (MQ=255)                                                                                                                                tGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGcc         >  5:338689/1‑149 (MQ=255)                                                                                                                                       ccAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGcc  >  4:349647/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                         GCCTGGCGCTTTGCTCGATGAGCGCGCCGATCGAGCAGGAGGATCGACACCAGGTCATCGTGCCGCGTAAAGGTATCCTGGAGTTGGCGCGCCTGCTGACCGATCCTGAAGGTAT‑GGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCC  >  NC_002947/11629‑11910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.