New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 144237 | 43 (0.760) | 3 (0.060) | 3/242 | NT | 6.5% | intergenic (+216/‑530) | PP_0136/gltP | hypothetical protein/glutamate/aspartate‑proton DAACS transporter |
? | NC_002947 | = 144275 | 46 (0.870) | intergenic (+254/‑492) | PP_0136/gltP | hypothetical protein/glutamate/aspartate‑proton DAACS transporter |
CATGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACAG > NC_002947/144129‑144422 | caTGACCAAGGGGTCGGGGTGATCTGATTGTTACAGGACCTGAGTGGGCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCTGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga > 3:256909‑M2/1‑147 (MQ=255) ccAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTTTCACAGGGATACCTTGCCAGACCTga > 6:341229‑M2/1‑142 (MQ=255) ccAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttcc < 6:59269‑M2/149‑8 (MQ=255) ccAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga < 5:341229‑M2/144‑3 (MQ=255) ggggTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccga > 4:319545‑M2/1‑138 (MQ=255) gggTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCgagga < 2:10705/149‑1 (MQ=255) gggCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCAt < 3:301212/149‑1 (MQ=255) ggCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCTGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATg < 5:59269/149‑1 (MQ=255) ggCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATg > 6:169622/1‑149 (MQ=255) aTTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCAGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATNTAGGaacctt > 6:283470/1‑145 (MQ=255) aCAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTg > 4:262014‑M2/1‑115 (MQ=255) aCAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTg < 3:262014‑M2/116‑2 (MQ=255) gACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCtt < 5:158445/149‑1 (MQ=255) gACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCtt < 5:169622/149‑1 (MQ=255) ccGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTgc > 8:2067/1‑149 (MQ=255) cGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTg > 3:327724‑M2/1‑108 (MQ=255) cGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTg < 4:327724‑M2/109‑2 (MQ=255) gTGGCCTAGGGGTACAGGGAGTGCCTCCAGTTATGGGCAGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACATGGATACATTGCCACACCTGACTTCAGAGGAGCCAAGTAGGAAACGTCGATTCCATTGCGCGtt > 1:38497/1‑149 (MQ=255) gCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGGCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGttttt < 7:247395/149‑1 (MQ=255) cTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTccc < 5:145971/135‑1 (MQ=255) cTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTccc > 6:145971/1‑135 (MQ=255) gTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTgg < 8:81806/149‑1 (MQ=255) tACAGGGAGAGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTggg > 6:183327/1‑149 (MQ=255) ccgggAGGTCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCAGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGac < 5:283470/147‑1 (MQ=255) cAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGac < 4:106810/149‑1 (MQ=255) gAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGTAGTCTCAGGTCGGCGGTTTCACAGGGATACCTTTCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACTTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAt < 2:38497/149‑1 (MQ=255) aGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGtttttt < 6:310419/125‑1 (MQ=255) aGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGa < 7:2067/149‑1 (MQ=255) aGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCATCCCTTGCGCGtttttt > 5:310419/1‑125 (MQ=255) gTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGAc > 1:4429/1‑149 (MQ=255) aaTGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCg > 8:122318/1‑149 (MQ=255) ccGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACAt > 4:259069/1‑148 (MQ=255) ggTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCaaa < 7:122318/149‑1 (MQ=255) ggAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAttttt < 2:4429/149‑1 (MQ=255) gAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAtttttt > 8:105570/1‑149 (MQ=255) aaGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTc < 5:183327/149‑1 (MQ=255) aaTCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGtctc < 8:297918/120‑1 (MQ=255) aaTCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGtctc > 7:297918/1‑120 (MQ=255) ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcctgtaacaatcagagcagcccgaccccttgg < 4:294490‑M2/149‑105 (MQ=255) ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACAAATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCgg > 8:168567/1‑149 (MQ=255) gAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctgtcctgacccggcccattactggaggcactcgctgtacccctaggccactccggtcctgtaacaatcagagcagcccgaccccttgg < 1:249757‑M2/148‑105 (MQ=255) gAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGt < 3:259069/149‑1 (MQ=255) gAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGt > 3:168915/1‑149 (MQ=255) aaGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcctgtaacaatcagagcagcccgaccccttggt < 2:111607‑M2/148‑106 (MQ=255) tcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTGCGGTGCGCGTTTTTTCCCCTGGGCGACCGTTTGTCTCGACCGTACATCAAATTTTTTTCGACCGTCTCGGtgctgc > 2:90401/1‑148 (MQ=255) tcAGGTCGGCGGTGTCACAGGGATACCTAGCCAGACCTGACTTCCGAGGAGCCATGAAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCACCTGGGACACATATTGTATAGACAGTACATAAAATTTTTTTCGACAATCTCGGtgatga > 2:32334/1‑147 (MQ=255) aGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGATGCTGCTa > 8:335157/1‑148 (MQ=255) gTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACaa > 4:245274/1‑149 (MQ=255) cggcggTGTCACAGGGATACCTTGCCAGACCTGACTTCCTAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTAGGTGCTGCTACAAGt < 8:204633/149‑1 (MQ=255) gtCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACCCATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCAtt > 7:242835/1‑148 (MQ=255) tCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACTTCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTc > 2:186722/1‑149 (MQ=255) tCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACTTCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTc > 2:192507/1‑149 (MQ=255) caGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAtttt > 4:32515/1‑87 (MQ=255) caGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAtttt < 3:32515/87‑1 (MQ=255) ggATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTtctc < 1:104436/120‑1 (MQ=255) ggATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTtctc > 2:104436/1‑120 (MQ=255) tACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGATGCTGCTACAAGTGGCATTTCCGCCATTCg < 7:335157/149‑1 (MQ=255) tACCTTGCCAGACCTGACTTCCGAGGAGCCACGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCg > 4:171733/1‑149 (MQ=255) cAGACCTGACTTCCGAGGAGCCATTTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTc > 5:116514/1‑148 (MQ=255) aCCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAAc < 3:245274/149‑1 (MQ=255) ccTGACTTCCGAGGAGCCACGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACa < 3:171733/149‑1 (MQ=255) cTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACAg > 5:141401/1‑149 (MQ=255) | CATGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACAG > NC_002947/144129‑144422 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |