New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478261 =	37 (0.650)	3 (0.070)	3/200	NT	11.0%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478356 =	20 (0.460)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

CCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGG  >  NC_002947/478209‑478497                                                                                                                                                    |                                                                                                                                              ccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTACTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGGAGGAGCGGGTTTACCCGCGAAGAGGCCggg                                                                                                                                              >  4:305981/1‑148 (MQ=255)                             gTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAg                                                                                                                  >  6:100030/1‑149 (MQ=255)                                 aCGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCt                                                                                                              >  1:23470/1‑149 (MQ=255)                                 aCGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCt                                                                                                              >  2:294041/1‑149 (MQ=255)                                   gCCCGCTTGAGCCTTTATCGGCCTCTTCGCGGGTAACCCCGCTCCTACGAGGGGCTGAGCCCAACCTCTTATGTGTGCCCCCTTTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCttt                                                                                                            <  6:155322/149‑1 (MQ=39)                                                   aTCGGCCTCTCCGCGGTTAACCCCGCTCCAACGCCGGGCTCAGCCCAACCTCTGTTGTGTGCCCCCTGTTGGAGCGGGTTAACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                             <  4:127125/148‑1 (MQ=255)                                                      GGCCTCTTCGCTGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGGGTGCCCCCTGTAGTAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAg                                                                                          >  7:135492‑M1/1‑148 (MQ=255)                                                      GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGt                                                                                         >  5:100030‑M1/1‑149 (MQ=255)                                                        CCTCTTCCCGGGTAACCCCGCTCCTACGACGGGCTGAGCCCAACCTCTTATGTGTGCCCCCTGTCGGCGCGGTTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGc                                                                                       >  3:305981‑M1/1‑149 (MQ=255)                                                            TTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCg                                                                                   <  3:115999‑M1/149‑1 (MQ=255)                                                                     AAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          <  8:231480‑M1/101‑1 (MQ=255)                                                                     AAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          >  7:231480‑M1/1‑101 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          >  1:126101‑M1/1‑99 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          <  4:104731‑M1/99‑1 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          >  3:104731‑M1/1‑99 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                          <  2:126101‑M1/99‑1 (MQ=255)                                                                        cccgctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAg                                                                                          <  4:236455‑M2/54‑1 (MQ=255)                                                                        cccgctcctacagggggcacacatcagaggttgggctcagccagtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAg                                                                                          >  3:236455‑M2/77‑130 (MQ=255)                                                                         cgGCTCCTAGCACGGGCTCCCCCAAACCTCTGATGTGGGCCCCCGGACGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGAc                                                                      >  1:193467‑M1/3‑149 (MQ=255)                                                                           gctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCg                                                                    >  7:188795‑M2/74‑149 (MQ=255)                                                                               CTACTACGGGCTGTGCCCAACGTGTGATGGGTGCCCCCTTTTGGAGGGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                             >  8:116809‑M1/1‑120 (MQ=255)                                                                               CTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                             <  7:116809‑M1/120‑1 (MQ=255)                                                                                     cgGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCgg                                                          >  6:265073/1‑149 (MQ=255)                                                                                        gCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCg                                                                    >  7:47505/1‑136 (MQ=255)                                                                                        gCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCg                                                                    <  8:47505/136‑1 (MQ=255)                                                                                          tGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGATTg                                                      >  6:274950/1‑148 (MQ=255)                                                                                            aGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCa                                                    <  2:23470/148‑1 (MQ=255)                                                                                              cccAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAcc                                                  >  6:23312/1‑148 (MQ=255)                                                                                                cAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGCCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAAc                                               <  5:361244/149‑1 (MQ=255)                                                                                                 aaCCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACg                                              >  3:105977/1‑149 (MQ=255)                                                                                                   cgtcgcaTGTTTCCCCCCTTTAGGAGCGGGTTTACCCGCTAAGAGGCCGGTAGGTCTAACCGCGCTGTTAAGCCTCTAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCTGCTTGCACCAACGGc                                            <  2:48059/143‑1 (MQ=255)                                                                                                    ctctGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCt                                           >  5:50890/1‑149 (MQ=255)                                                                                                        gATCTGTCCCCCCTGTAGGAGCGGGTTTACCCGCGAACAGCCAGGTAGGTCTAACCGCTCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCac                                                               >  3:156382/1‑124 (MQ=255)                                                                                                         aTGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTc                                         <  5:265073/146‑1 (MQ=255)                                                                                                             gtgCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCa                                  >  2:147679/1‑149 (MQ=255)                                                                                                              tgCCCCCTGTAGCAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCAc                                 <  7:246775/149‑1 (MQ=255)                                                                                                                cccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCg                               >  8:235728/1‑149 (MQ=255)                                                                                                                 ccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                             >  2:245534/1‑86 (MQ=255)                                                                                                                 ccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                             <  1:245534/86‑1 (MQ=255)                                                                                                                  cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGc                              >  8:105325/1‑148 (MQ=255)                                                                                                                             cgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGcgccgccgc                  <  7:105325‑M2/126‑1 (MQ=255)                                                                                                                               ggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAgcgc                                                                                                               >  2:217406‑M2/22‑54 (MQ=255)                                                                                                                               ggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAgcgc                                                                                                               <  1:217406‑M2/33‑1 (MQ=255)                                                                                                                                      ccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGcc         >  6:197162‑M2/15‑149 (MQ=255)                                                                                                                                         cgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGGCTCg      <  4:115999‑M2/138‑1 (MQ=255)                                                                                                                                          gaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGc     <  1:147679‑M2/139‑1 (MQ=255)                                                                                                                                             gaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAgg  <  8:188795‑M2/142‑1 (MQ=255)                                                                                                                                             gaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAgg  <  6:32765‑M2/142‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              CCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGG  >  NC_002947/478209‑478497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.