New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 934031	62 (1.090)	3 (0.060)	3/246	NT	5.1%	coding (11591/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 934100	52 (0.970)					coding (11522/18933 nt)	PP_0806	surface adhesion protein

GGTGCCGTCGCTGCCGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTGCAGTTACAGTGC  >  NC_002947/933958‑934238                                                                                                                                               |                                                                                                                                           ggTGCCGTCGCTGCCGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACcggtcg                                                                                                                                      >  6:73250‑M2/1‑143 (MQ=255)    gCCGTCGCTGCCGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGc                                                                                                                                   >  8:163301/1‑149 (MQ=255)             gCCGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTg                                                                                                                          <  6:326806/149‑1 (MQ=255)              ccGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTgg                                                                                                                         >  3:105743/1‑149 (MQ=255)               cGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTgg                                                                                                                         >  7:94312/1‑148 (MQ=255)                gACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTa                                                                                                                       <  5:12267/149‑1 (MQ=255)                     cggCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCa                                                                                                                  <  5:224641/148‑1 (MQ=255)                       gcgcTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAg                                                                                                                 <  6:10982/148‑1 (MQ=255)                               cAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGt                                                                                                        <  4:105743/149‑1 (MQ=255)                                aGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGtt                                                                                                       >  1:309529/1‑149 (MQ=255)                                      gtgCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGATGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTg                                                                                                                          <  6:121242/124‑1 (MQ=255)                                      gtgCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTg                                                                                                                          >  5:121242/1‑124 (MQ=255)                                        gCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAg                                                                                               >  1:68934/1‑149 (MQ=255)                                         ccACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAgg                                                                                              <  2:68934/149‑1 (MQ=255)                                          cACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAggg                                                                                             <  5:310219/149‑1 (MQ=255)                                           aCCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGt                                                                                            >  5:14193/1‑149 (MQ=255)                                           aCCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGt                                                                                            >  7:3903/1‑149 (MQ=255)                                            ccGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAggg                                                                                             >  7:310034/1‑147 (MQ=255)                                            ccGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAggg                                                                                             <  8:310034/147‑1 (MQ=255)                                                  gTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGc                                                                                                               >  2:345918/1‑123 (MQ=255)                                                  gTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGc                                                                                                               <  1:345918/123‑1 (MQ=255)                                                  gTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGcc                                                                                                    >  4:158090/1‑134 (MQ=255)                                                  gTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGcc                                                                                                    <  3:158090/134‑1 (MQ=255)                                                     aCGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGa                                                                                         >  4:108574/1‑142 (MQ=255)                                                     aCGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGa                                                                                         <  3:108574/142‑1 (MQ=255)                                                     aCGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATcaccac                                                                                  >  6:213519/1‑149 (MQ=255)                                                      cGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATcaccac                                                                                  >  3:29813/1‑148 (MQ=255)                                                       ggTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGcc                                                                                                    <  1:51795/129‑1 (MQ=255)                                                       ggTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGcc                                                                                                    >  2:51795/1‑129 (MQ=255)                                                               gCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACcggtcggctcgctgattaccgtgacctccggtggcaccacgctgggtagcgccacggtcggcagcgac                                                                        <  2:127154‑M2/149‑69 (MQ=255)                                                                    ccGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTc                                                                   <  8:11741/149‑1 (MQ=255)                                                                    ccGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTc                                                                   <  6:14193/149‑1 (MQ=255)                                                                           tACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGAt                                                            <  5:213519/149‑1 (MQ=255)                                                                           tACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGAt                                                            <  7:163301/149‑1 (MQ=255)                                                                              cTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGcc                                                         <  8:3903/149‑1 (MQ=255)                                                                              cTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGc                                                          >  7:17511/1‑148 (MQ=255)                                                                              cTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGc                                                          >  2:320943/1‑148 (MQ=255)                                                                              cTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGc                                                          >  8:335526/1‑148 (MQ=255)                                                                               ttGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACcggtcggctcgctgattaccgtgacctccggtggcaccacgctgggtagcgccacggtcgggagcgacggcaccttccgtgtgt                                                        <  6:209949‑M2/149‑85 (MQ=255)                                                                                 ggCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACcggtcggctcgctgattaccgtgacctccggtggcaccacgctgggtagcgccacggtcggcagcgacggcaccttccgtgtgt                                                        >  1:127154‑M2/1‑63 (MQ=255)                                                                                      gTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTgg                                                 <  8:17291/149‑1 (MQ=255)                                                                                      gTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTgg                                                 >  5:277039/1‑149 (MQ=255)                                                                                           cagGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCg                                                                                                         <  2:169093/88‑1 (MQ=255)                                                                                           cagGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCg                                                                                                         >  1:169093/1‑88 (MQ=255)                                                                                           cagGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGa                                            <  6:277039/149‑1 (MQ=255)                                                                                           cagGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGa                                            <  1:320943/149‑1 (MQ=255)                                                                                            agGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGAc                                           <  2:309529/149‑1 (MQ=255)                                                                                                   cGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATc                                    <  4:29813/149‑1 (MQ=255)                                                                                                   cGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATc                                    <  3:125482/149‑1 (MQ=255)                                                                                                   cGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATc                                    <  7:335526/149‑1 (MQ=255)                                                                                                            tGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTg                           >  6:145643/1‑149 (MQ=255)                                                                                                              aTGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGcc                         <  5:145643/149‑1 (MQ=255)                                                                                                                 gCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTc                      >  2:249664/1‑149 (MQ=255)                                                                                                                         cGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTGAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTg              >  4:70554/1‑149 (MQ=255)                                                                                                                              gCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTGCAGtt         <  8:94312/149‑1 (MQ=255)                                                                                                                                    ccACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTGCAGTTACAGTg   >  8:8435/1‑149 (MQ=255)                                                                                                                                     cACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTGCAGTTACAGTGc  >  7:21271/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                           GGTGCCGTCGCTGCCGACCGTGGCGCTACCCAGCGTGGTGCCACCGGAGGTCACGGTAATCAGCGAGCCGACCGTACCTTGGCCAGTCAGCAGGAAACCGTCGACGCTGATGGCAAGGGCCGAAGGCGTGGCCACTTCGGTACCGGTCGGGCCAGTCAGTGGTATTTCAGGCGACTCGTTGCCGGCAGGGTCGATCACCACCACATCGACGGTTTCGCCTGATGCCAGCGGTGGGGCGACCGGTATCACGAAGGTGCCGTCCGGCCCTGCAGTTACAGTGC  >  NC_002947/933958‑934238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.