New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1343386	40 (0.710)	3 (0.060)	3/246	NT	7.1%	coding (166/1281 nt)	PP_1167	TRAP dicarboxylate transporter subunit DctM
	?	NC_002947	= 1343408	41 (0.760)					coding (144/1281 nt)	PP_1167	TRAP dicarboxylate transporter subunit DctM

GATGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAACGCTTCCATTTAC  >  NC_002947/1343261‑1343555                                                                                                                                                    |                                                                                                                                                    gATGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAc                                                                                                                                                    <  4:3729‑M2/149‑2 (MQ=255)  aTGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAct                                                                                                                                                   >  3:3729‑M2/1‑147 (MQ=255)  aTGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGAGCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAct                                                                                                                                                   >  6:217463‑M2/1‑147 (MQ=255)   tGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCActg                                                                                                                                                  <  4:145732‑M2/149‑4 (MQ=255)    gTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCActgg                                                                                                                                                 <  8:216771‑M2/149‑5 (MQ=255)          cAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCt                                                                                                                                           <  3:62161/149‑1 (MQ=255)          cAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCt                                                                                                                                           <  7:216771/149‑1 (MQ=255)                    ccGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGatcatcat                                                                                                                                 >  4:318751/1‑149 (MQ=255)                     cGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGatcatcatc                                                                                                                                <  2:146985/149‑1 (MQ=255)                       ccACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGc                                                                                                                              <  2:108006/149‑1 (MQ=255)                       ccACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGc                                                                                                                              <  3:318751/149‑1 (MQ=255)                                 aGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCggg                                                                                                                    <  3:145732/149‑1 (MQ=255)                                    ccaccaGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCgg                                                                                                                     <  4:142514/145‑1 (MQ=255)                                    ccaccaGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCgg                                                                                                                     >  3:142514/1‑145 (MQ=255)                                       ccaGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAct                                                                                                                                                   >  4:53212‑M2/1‑110 (MQ=255)                                       ccaGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAct                                                                                                                                                   <  3:53212‑M2/112‑3 (MQ=255)                                           cACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATc                                                                                                           >  2:223064/1‑148 (MQ=255)                                              cccGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAc                                                                                                                                                    <  6:188650‑M2/104‑2 (MQ=255)                                              cccGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCAc                                                                                                                                                    >  5:188650‑M2/1‑103 (MQ=255)                                              cccGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATccac                                                                                                        >  4:135700/1‑148 (MQ=255)                                              cccGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATccac                                                                                                        >  6:43475/1‑148 (MQ=255)                                              cccGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATAATCGCCTGCAGCGGGATGTCGATccac                                                                                                        >  8:71057/1‑148 (MQ=255)                                                cGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAg                                                                                                     >  1:341599/1‑149 (MQ=255)                                                  gCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCgg                                                                                                                     <  2:139400/131‑1 (MQ=255)                                                  gCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCgg                                                                                                                     >  1:139400/1‑131 (MQ=255)                                                  gCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGgc                                                                                                   <  2:84800/149‑1 (MQ=255)                                                    aaaGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGgcgc                                                                                                 <  1:199171/149‑1 (MQ=255)                                                          caccaGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGAt                                                                                             >  8:18142/1‑147 (MQ=255)                                                            ccaGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGt                                                                                         >  4:130946/1‑149 (MQ=255)                                                             caGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTg                                                                                        <  1:223064/149‑1 (MQ=255)                                                                 cgccgcGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGa                                                                                    <  7:18142/149‑1 (MQ=255)                                                                   ccgcGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACa                                                                                  <  5:106172/149‑1 (MQ=255)                                                                          aTGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAg                                                                           <  2:323799/149‑1 (MQ=255)                                                                            gccgccTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAggg                                                                         >  7:236878/1‑149 (MQ=255)                                                                              cgccTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATc                                                                                                           >  3:157546/1‑113 (MQ=255)                                                                              cgccTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATc                                                                                                           <  4:157546/113‑1 (MQ=255)                                                                                 aaggcggcATGATCGCGCCGGCGAGCACGAAGAATGGAATGGCGAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATACACCAGGCGCCGATCAGTGCCGACAGGCCCAGTGGGTAg                                                                    <  1:324583/142‑1 (MQ=255)                                                                                                 gcCGGCCAGCACGAAGAATGGAATGGCCATCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGa                                                    <  7:66801/149‑1 (MQ=255)                                                                                                    ggCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCa                                                 <  8:236878/149‑1 (MQ=255)                                                                                                    ggCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCa                                                 <  2:341599/149‑1 (MQ=255)                                                                                                                gaatggaatgGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGa                                     >  7:179454/1‑149 (MQ=255)                                                                                                                  atggaatggCCAGCAGGGAGAACTTGTTAACACCActggccattccattcttcgtgctggccggcgcgatcatggccgaaggcggcatgtcgcggcggctggtggcctttgccggggtgctggtgggcttcgtgcgtggcgggctgtc                                    >  7:116384‑M2/1‑35 (MQ=255)                                                                                                                  atggaatggCCAGCAGGGAGAACTTGTTAACACCActggccattccattcttcgtgctggccggcgcgatcatggccgaaggcggcatgtcgcggcggctggtggcctttgccggggtgctggtgggcttcgtgcgtggcgggctgtc                                    <  8:116384‑M2/148‑114 (MQ=255)                                                                                                                     gaatggCCAGCAGGGAGAACTTGTTAACACCActggccattccattcttcgtgctggccggcgcgatcatggccgaaggcggcatgtcgcggcggctggtggcctttgccggggtgctggtgggcttcgtgcgtggcgggctgtcgctg                                <  4:183528‑M2/149‑118 (MQ=255)                                                                                                                               cagGGATAACTTGTTAACACCACTGGCCACCTGGATGATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACa                      <  3:135700/149‑1 (MQ=255)                                                                                                                               cagGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACa                      <  8:179454/149‑1 (MQ=255)                                                                                                                                  gtagaACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCAACAAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCAGATCAGAATCAGCACGATGAAACTTCACAACAGaa                   >  2:29223/3‑149 (MQ=255)                                                                                                                                  ggAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGCTCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGAGCAGAATCAGCACGATGATACTGCCCACCAGaa                   >  2:352898/1‑149 (MQ=255)                                                                                                                                   gagaACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAAt                  >  2:214345/1‑149 (MQ=255)                                                                                                                                       tggtaatAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAAc              <  2:110041/143‑1 (MQ=255)                                                                                                                                       aCTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCATCGTGATGTCGATCCACCAGGCTCAGATCAGTGCCGAAAGGCCCAGGGCGTAGGCTACCGGAATGCCGATCAGAAACAGCACGATGAAACTGCCCAACAGAATTaa               <  1:29223/148‑1 (MQ=255)                                                                                                                                        cTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAAc              >  7:292241/1‑148 (MQ=255)                                                                                                                                        cTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAAc              <  8:292241/148‑1 (MQ=255)                                                                                                                                         ttGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGTATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAgg                                                                          <  8:87999/87‑1 (MQ=255)                                                                                                                                              aaCACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAACGCTTCCa       >  6:354641/1‑149 (MQ=255)                                                                                                                                                   cacTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAACGCTTCCATTTAc  >  1:228677/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GATGTTGACCAGCGACAGCCCGCCACGCACGAAGCCCACCAGCACCCCGGCAAAGGCCACCAGCCGCCGCGACATGCCGCCTTCGGCCATGATCGCGCCGGCCAGCACGAAGAATGGAATGGCCAGCAGGGAGAACTTGTTAACACCACTGGCCACCTGGATCATCATCGCCTGCAGCGGGATGTCGATCCACCAGGCGCCGATCAGTGCCGACAGGCCCAGGGCGTAGGCTACCGGCATGCCGATCAGAATCAGCACGATGAAACTGCCCAACAGAATGAACGCTTCCATTTAC  >  NC_002947/1343261‑1343555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.