New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3678438	56 (0.990)	3 (0.060)	3/250	NT	5.2%	coding (1441/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	= 3678469	56 (1.030)					coding (1472/1569 nt)	PP_3242	GGDEF domain‑containing protein

TGGCGCGGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGAAAACTA  >  NC_002947/3678323‑3678611                                                                                                                                                              |                                                                                                                                                 tGGCGCGGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGACGGGATCGCGGTGGTCGACCTGTCTAGG‑TAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tgg                                                                                                                                                <  6:285373‑M2/149‑3 (MQ=255)     gcgGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tggt                                                                                                                                               <  8:810‑M2/146‑4 (MQ=255)     gcgGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tggt                                                                                                                                               >  7:810‑M2/1‑143 (MQ=255)     gcgGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTcgc                                                                                                                                            >  3:312112/1‑149 (MQ=255)        gAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCgcggc                                                                                                                                         <  4:116834/149‑1 (MQ=255)         aaCTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑CTCGAGG‑CGC‑‑‑‑TGGGCgcggcg                                                                                                                                        >  2:231861/1‑149 (MQ=255)         aaCTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGAGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCTCT‑‑‑‑‑AGCGAGG‑CGC‑‑‑‑TGGTCgcggcg                                                                                                                                        >  2:226768/1‑149 (MQ=255)          aCTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGTCACT‑‑‑‑‑ATCGATG‑CGC‑‑‑‑TGGTCGcggcgg                                                                                                                                       <  8:330810/149‑1 (MQ=255)          aCTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGcggcgg                                                                                                                                       <  7:305349/149‑1 (MQ=255)            tgctgGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCggcggc                                                                                                                                      >  4:183514/1‑148 (MQ=255)              ctgGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCggcggc                                                                                                                                      <  3:183514/146‑1 (MQ=255)              ctgGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCt                                                                                                                                     <  3:179560/147‑1 (MQ=255)                       gAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGtt                                                                                                                          <  3:346744/149‑1 (MQ=255)                         gTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCgcggc                                                                                                                                         <  8:328529/132‑1 (MQ=255)                         gTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCgcggc                                                                                                                                         >  7:328529/1‑132 (MQ=255)                             cagcagCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTAc                                                                                                                      >  6:20839/1‑147 (MQ=255)                              agcagcTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAg                                                                                                                   >  1:357259/1‑149 (MQ=255)                                cagcTGTTGCGCCGTCAGGCGCTGGAACATGCAGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGc                                                                                                                 >  1:226729/1‑149 (MQ=255)                                  gcTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGcc                                                                                                                >  6:42017/1‑148 (MQ=255)                                          gcCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AAcagcag                                                                                                      >  5:219001/1‑149 (MQ=255)                                            cGTCTGGCGCTGGAACTTGCGGCCAGCCGATTGGGTAGGGTGTCTTTCAGTGCCGGGATCGCGGTGTTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAggg                                                                                                    <  5:285373/149‑1 (MQ=255)                                            cGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAggg                                                                                                    <  5:20839/149‑1 (MQ=255)                                             gTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAgggg                                                                                                   <  5:42017/149‑1 (MQ=255)                                                aGGCGCTGGAACATACCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTAc                                                                                                                      <  2:162943/128‑1 (MQ=255)                                                aGGCGCTGGAACATACCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTAc                                                                                                                      >  1:162943/1‑128 (MQ=255)                                                  gggcTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACGTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCgaga                                                                                              <  1:266432/147‑1 (MQ=255)                                                  gcgcTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCgaga                                                                                              <  5:50295/149‑1 (MQ=255)                                                   cgcTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGAt                                                                                             <  6:219001/149‑1 (MQ=255)                                                     cTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATgg                                                                                           <  2:357259/149‑1 (MQ=255)                                                        gAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTa                                                                                        >  3:135632/1‑149 (MQ=255)                                                              gccgccAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACTGGAAGAGGGAGGAGGCTGTGTGGTCGCCGCGGCTGGTGGGGCGTTGACCCAGGCCA‑AACAACAGGGGCgagagg                                                                                            >  1:297850/1‑147 (MQ=255)                                                                  ccAGCCCATTGGGACGGGTGTCTTGCAGTGGCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGcc                                                                              <  8:286147/149‑1 (MQ=255)                                                                  ccAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AAc                                                                                                           >  6:133691/1‑120 (MQ=255)                                                                  ccAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AAc                                                                                                           <  5:133691/120‑1 (MQ=255)                                                                      cccTTTGGGAAGGGTGTCTTTCAGGGCCGGGATGGCGGTGGGCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGaa                                                                          <  5:198109/149‑1 (MQ=255)                                                                      cccATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGGAAAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCgg                                                                            >  1:281318/1‑148 (MQ=255)                                                                             ggAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tgg                                                                                                                                                <  3:101610‑M2/73‑3 (MQ=255)                                                                             ggAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tgg                                                                                                                                                >  4:101610‑M2/1‑71 (MQ=255)                                                                                aGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTggcggc                                                                <  4:135632/149‑1 (MQ=255)                                                                                   gtgtCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCggcagg                                                             >  5:54446/1‑149 (MQ=255)                                                                                   gtgtCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACAAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCggcagg                                                             >  2:91240/1‑149 (MQ=255)                                                                                        tttCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCggcagggcag                                                         >  4:342579/1‑148 (MQ=255)                                                                                          tCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGaa                                                       <  6:54446/148‑1 (MQ=255)                                                                                            aGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTg                                                    <  4:312112/149‑1 (MQ=255)                                                                                               gCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCt                                                  >  3:33728/1‑148 (MQ=255)                                                                                                ccGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGa                                                >  8:191181/1‑149 (MQ=255)                                                                                                   ggATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTg                                                    >  1:209261/1‑142 (MQ=255)                                                                                                   ggATCGCGGTGGTCGACCGGGCGCGG‑GCGGGGGGCACT‑‑‑‑‑ATCGCGG‑CGC‑‑‑‑GGGGCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTg                                                    <  2:209261/142‑1 (MQ=255)                                                                                                      tCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACctggc                                          >  6:119170/1‑149 (MQ=255)                                                                                                        gcgGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACctggctg                                        >  8:210165/1‑149 (MQ=255)                                                                                                         cgGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACctggctg‑g                                      <  1:283582/149‑1 (MQ=255)                                                                                                          ggtggtCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tggtcgaccaccgcgatcccggcactgaaagacacccttcccaatgggctggcggcatgttccagcgcctgacggcgcaacagctgctgtaactcctgcaccagcagt                                       <  8:102702‑M2/149‑108 (MQ=255)                                                                                                           gttgtCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑gag                                    <  2:226729/146‑1 (MQ=255)                                                                                                            tggtCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tggtcgaccaccgcgatcccggcactgaaagacacccttcccaatgggctggcggcatgttccagcgcctgacggcgcaacagctgctgtaactcctgcaccagcagttc                                     >  7:102702‑M2/1‑40 (MQ=255)                                                                                                            tggtCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACctggctg                                        >  1:348279/1‑145 (MQ=255)                                                                                                                  aCCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑Tggtcgaccaccgcgatcccggcactgaaagacacccttcccaatgggctggcggcatgttccagcgcctgacggcgcaacagctgctgtaactcctgcaccagcagttccgcgc                                <  2:235632‑M2/148‑115 (MQ=255)                                                                                                                  aCCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCgg                             <  7:191181/149‑1 (MQ=255)                                                                                                                       gcgcGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGgcg                        >  2:334683/1‑149 (MQ=255)                                                                                                                                   gggCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGgcgc             <  1:334683/149‑1 (MQ=255)                                                                                                                                   gggCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTAGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGgcgc             <  2:297850/149‑1 (MQ=255)                                                                                                                                      cACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGAt          <  7:139448/149‑1 (MQ=255)                                                                                                                                      cACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGAt          <  3:342579/149‑1 (MQ=255)                                                                                                                                         t‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCAGAACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATg         >  1:261285/1‑148 (MQ=255)                                                                                                                                         t‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGa        >  1:362917/1‑148 (MQ=255)                                                                                                                                         t‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTAGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGa        >  4:253387/1‑148 (MQ=255)                                                                                                                                                tCGAGG‑GGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGGGAGATGGGTATTGCGGGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTGAGAGATCGCGGGCGCGCCATGCGGCGCGATGaaa      <  1:226768/149‑1 (MQ=255)                                                                                                                                                tCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGAAGAATTGCTGACCTGTCTGAGAGATCGCGGGGGCGCCATGCGGCGCGATGaaa      <  1:231861/149‑1 (MQ=255)                                                                                                                                                 cGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGAAAAc    <  4:33728/149‑1 (MQ=255)                                                                                                                                                   aGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGAAAACTa  <  5:119170/149‑1 (MQ=255)                                                                                                                                                   aGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTAGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGAAAACTa  <  3:253387/149‑1 (MQ=255)                                                                                                                                                              |                                                                                                                                                 TGGCGCGGAACTGCTGGTGCAGGAGTTACAGCAGCTGTTGCGCCGTCAGGCGCTGGAACATGCCGCCAGCCCATTGGGAAGGGTGTCTTTCAGTGCCGGGATCGCGGTGGTCGACCTGGCGCGG‑GAGGGGGGCACT‑‑‑‑‑ATCGAGG‑CGC‑‑‑‑TGGTCGCGGCGGCTGATGGGGCGTTGTACCAGGCCA‑AACAGCAGGGGCGAGATGGGTATTGCGTGGCCGGAAGTTTGGCGGCAGGGCAGAATTGCTGACCTGGCTG‑GAGATCGCGGGGGCGCCATGCGGCGCGATGAAAACTA  >  NC_002947/3678323‑3678611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.