New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3950524 | 52 (0.920) | 3 (0.060) | 3/246 | NT | 5.6% | coding (513/1491 nt) | PP_3486 | cytochrome c |
? | NC_002947 | = 3950567 | 52 (0.970) | coding (470/1491 nt) | PP_3486 | cytochrome c |
ACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGATT > NC_002947/3950423‑3950700 | aCCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgt < 7:65432‑M2/149‑5 (MQ=255) aCCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgt < 5:308708‑M2/149‑5 (MQ=255) ccGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgtg < 6:74035‑M2/149‑6 (MQ=255) ccGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgtg < 2:135429‑M2/149‑6 (MQ=255) aaCCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgcgc < 2:116207/149‑1 (MQ=255) ccTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCACGGCgcag > 2:364023/1‑149 (MQ=255) gTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCcctcc > 3:298613/1‑149 (MQ=255) gTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCcct < 8:65432/147‑1 (MQ=255) cGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCctcctc < 1:135429/148‑1 (MQ=255) gACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCca > 3:119819/1‑149 (MQ=255) ccAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCcaca < 2:217766/149‑1 (MQ=255) ccAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCcaca > 2:347779/1‑149 (MQ=255) ccAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCcaca < 3:263359/149‑1 (MQ=255) ttCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAg > 2:33087/1‑149 (MQ=255) ccAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAgg < 6:329301/148‑1 (MQ=255) ccAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGAACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAgg < 4:40602/148‑1 (MQ=255) cAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGt < 4:256760/149‑1 (MQ=255) aGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTc < 2:112214/149‑1 (MQ=255) ggCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgc < 4:243379‑M2/110‑3 (MQ=255) ggCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgc > 3:243379‑M2/1‑108 (MQ=255) ccGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATc < 7:168028/149‑1 (MQ=255) ccTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt < 5:74035/149‑1 (MQ=255) cTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTg < 1:347779/149‑1 (MQ=255) cTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTg < 2:258031/149‑1 (MQ=255) gtGCTGGTATAGGTGACCCACGACGTCTTCCAGCACGGCACGCCCCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCTGTCAGCAGCGTGCCAAGGCGCATCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTga < 6:254585/148‑1 (MQ=255) gCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACAGCAGGGTCGCGTTCATCGGCCAAGCGTTTga < 1:33087/147‑1 (MQ=255) gttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAgg > 8:312786/1‑149 (MQ=255) ttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCgg > 6:217208/1‑130 (MQ=255) ttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCgg < 5:217208/130‑1 (MQ=255) ttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGc > 6:54215/1‑149 (MQ=255) gttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt < 2:258557/136‑1 (MQ=255) gttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt > 1:258557/1‑136 (MQ=255) gttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGt > 5:356895/1‑148 (MQ=255) ccACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGGAGGGCGGTGAGGTTg > 1:124649/1‑149 (MQ=255) cGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTgg > 3:161979/1‑149 (MQ=255) cGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCAAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCCGTGAGGTTGCGCTgg > 1:253825/1‑149 (MQ=255) aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGcc > 6:8279/1‑147 (MQ=255) aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGcc > 3:268922/1‑147 (MQ=255) aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGcc > 4:61654/1‑147 (MQ=255) gcacggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAg > 5:193651/1‑149 (MQ=255) gcacggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAg < 3:61654/149‑1 (MQ=255) cacggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTgcgc < 5:21414/136‑1 (MQ=255) cacggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTgcgc > 6:21414/1‑136 (MQ=255) acggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGt < 5:54215/149‑1 (MQ=255) ggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCa < 6:193651/149‑1 (MQ=255) cacgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgtgccgtgctggaagacggcgtgggtcaactcaaccagcaaggcggcattcacgggcggcgcctggaactggtcgtactagacccaggttccgacccgg < 5:114228‑M2/149‑102 (MQ=255) acgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGtt < 1:219546/149‑1 (MQ=255) acgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGtt < 6:308708/149‑1 (MQ=255) accaccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgtgccgtgctggaagacggcgtgggtcaactcaaccagcaaggcggcattcacgggcggcgcctggaactggtcgtac > 6:296206‑M2/1‑43 (MQ=255) accaccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAgcgtgccgtgctggaagacggcgtgggtcaactcaaccagcaaggcggcattcacgggcggcgcctggaactggtcgtac < 5:296206‑M2/123‑81 (MQ=255) accaccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTTCGCTGGTCGGCCAAGGTCAGTTCg > 5:153091/1‑147 (MQ=255) accaccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGaa < 4:298613/149‑1 (MQ=255) gCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTGTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTgg > 5:197429/1‑148 (MQ=255) cTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAg > 5:340336/1‑125 (MQ=255) cTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAg < 6:340336/125‑1 (MQ=255) cGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTGGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCgg < 6:356895/148‑1 (MQ=255) gCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTc > 3:186622/1‑149 (MQ=255) gCGGACCGGTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAgg < 7:312786/149‑1 (MQ=255) ccGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGAtt < 5:8279/149‑1 (MQ=255) cTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGt > 3:267487/1‑110 (MQ=255) cTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGt < 4:267487/110‑1 (MQ=255) | ACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGATT > NC_002947/3950423‑3950700 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |