New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4592868 =	46 (0.810)	3 (0.060)	3/250	NT	6.5%	coding (1127/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	4592908 =	42 (0.770)					coding (1167/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha

AGTACGCCTGTATGCCGAAGACCCGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTTGCTGCAG  >  NC_002947/4592761‑4593056                                                                                                                                                    |                                                                                                                                                     caatgttggttttcagcccgccaatggcgaactcatcgagcatggccagcaagcgcaaacgcgcctgctcgcggtcttcgccccaggcgatcagcttgcccagcatcGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGa                                                                                                                                                     >  2:66957‑M1/108‑149 (MQ=255)     cGCCTGTATGCCGAAGACCCGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCt                                                                                                                                                 <  6:156771/149‑1 (MQ=255)               ccGAAGACCCGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTGGCCGTTCTACGACCCGATGCTGGGCAAGCt                                                                                                                                        <  1:30563/148‑1 (MQ=255)                    gACCCGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGGCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGc                                                                                                                                  <  5:96371/149‑1 (MQ=255)                       ccGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTg                                                                                                                               >  7:89834/1‑149 (MQ=255)                            cAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATAGCCTGGGGc                                                                                                                           >  4:96215/1‑148 (MQ=255)                              aCGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGaa                                                                                                                        <  6:365982/149‑1 (MQ=255)                                 tcatcgagcatggccagcaagcgcaaacgcgcctgctcgcggtcttcgccccaggcgatcagcttgcccagcatcGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATg                                                                                                                                                   >  4:356674‑M1/76‑119 (MQ=255)                                 tcatcgagcatggccagcaagcgcaaacgcgcctgctcgcggtcttcgccccaggcgatcagcttgcccagcatcGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATg                                                                                                                                                   <  3:356674‑M1/44‑1 (MQ=255)                                       tACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGa                                                                                                                <  4:324432/148‑1 (MQ=255)                                              gACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGAGATGTGGTGTCGCCGTTCTACGACCCGATGCAGGGCAAGCTGATCGCCTGGCGCGAAGACCGCGAGCAGgcgc                                                                                                        >  4:243626/1‑149 (MQ=255)                                                   gCAATTTAGCGCTGTACCGTGAATCGGCACCGGGCGGACGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGGCGTTCTTCGCCCCGCTGCAGCGCAAGCTGATCGCCTGGGGCGAAGCCCGCGAGCAGGCGCGGTTg                                                                                                   >  8:279763/1‑149 (MQ=255)                                                     aaaTTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTggg                                                                                                                             >  3:240325/1‑121 (MQ=255)                                                     aaaTTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTggg                                                                                                                             <  4:240325/121‑1 (MQ=255)                                                              cTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGc                                                                                        >  7:300152/1‑149 (MQ=255)                                                                   ccGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGc                                                                                   <  8:89834/149‑1 (MQ=255)                                                                    cGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCt                                                                                  >  8:88515/1‑149 (MQ=255)                                                                     gTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAg                                                                                                            >  6:139408/1‑122 (MQ=255)                                                                     gTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAg                                                                                                            <  5:139408/122‑1 (MQ=255)                                                                     gTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTc                                                                                 >  6:191718/1‑149 (MQ=255)                                                                     gTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTc                                                                                 >  3:271219/1‑149 (MQ=255)                                                                     gTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGATc                                                                                 >  4:7649/1‑149 (MQ=255)                                                                      tGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCCAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTc                                                                                 >  7:93196/1‑148 (MQ=255)                                                                        aaTCGGCACCTGGCGAAGGCCGGCGTGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCTAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              <  3:243626/149‑1 (MQ=255)                                                                        aaTCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              >  5:327129/1‑149 (MQ=255)                                                                        aaTCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              <  5:191718/149‑1 (MQ=255)                                                                        aaTCGGCACCTGGCGAAGGCCGGCGGGTGGACAGGGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              <  7:226180/149‑1 (MQ=255)                                                                          tCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGa                                                                            <  3:96215/149‑1 (MQ=255)                                                                             gCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACAGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGtt                                                                         >  2:43033/1‑149 (MQ=255)                                                                               aCCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCg                                                                       >  6:336749/1‑149 (MQ=255)                                                                                  tGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCa                                                                    >  3:164538/1‑149 (MQ=255)                                                                                         ggCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCgg                                                             <  8:300152/149‑1 (MQ=255)                                                                                          gCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCggg                                                            <  4:164538/149‑1 (MQ=255)                                                                                                  gTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAAc                                                    <  6:296775/149‑1 (MQ=255)                                                                                                     gACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGAc                                                                                                                     <  8:258088/81‑1 (MQ=255)                                                                                                     gACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGAc                                                                                                                     >  7:258088/1‑81 (MQ=255)                                                                                                      aCAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGaaaa                                                     <  6:208140/144‑1 (MQ=255)                                                                                                      aCAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGaaaa                                                     >  5:208140/1‑144 (MQ=255)                                                                                                       cAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACa                                               <  5:336749/149‑1 (MQ=255)                                                                                                        catcgggtcgtagaacggcgacaccacatcgccttcgctgacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGa                                                                            <  3:356674‑M2/75‑1 (MQ=255)                                                                                                        catcgggtcgtagaacggcgacaccacatcgccttcgctgacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGa                                                                            >  4:356674‑M2/45‑119 (MQ=255)                                                                                                          tcgggtcgtagaacggcgacaccacatcgccttcgctgacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTg                                            >  2:66957‑M2/43‑149 (MQ=255)                                                                                                          tGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              >  4:181561/1‑115 (MQ=255)                                                                                                          tGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGAt                                                                              <  3:181561/115‑1 (MQ=255)                                                                                                             GGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATg                                                                             >  3:235583‑M1/1‑113 (MQ=255)                                                                                                             GGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATg                                                                             <  4:235583‑M1/113‑1 (MQ=255)                                                                                                              GTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCtt                                        <  6:237364‑M1/149‑1 (MQ=255)                                                                                                                    gAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTgcg                                  >  7:293308/1‑149 (MQ=255)                                                                                                                      aGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTgcggc                                <  4:271219/149‑1 (MQ=255)                                                                                                                            tgtgGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATtc                          >  3:338167/1‑149 (MQ=255)                                                                                                                                        gTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCgg              >  1:82039/1‑149 (MQ=255)                                                                                                                                               gacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTtgc       >  5:182895‑M2/6‑149 (MQ=255)                                                                                                                                               gacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTtgc       >  4:19414‑M2/6‑149 (MQ=255)                                                                                                                                               gacccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTtgc       >  1:357439‑M2/6‑149 (MQ=255)                                                                                                                                                acccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGttt                                                                                                    <  7:212937‑M2/51‑1 (MQ=255)                                                                                                                                                acccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGttt                                                                                                    >  8:212937‑M2/5‑55 (MQ=255)                                                                                                                                                 cccGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTtgctg     >  1:152108‑M2/4‑149 (MQ=255)                                                                                                                                                    gATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTTGCTGCAg  >  7:194297/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AGTACGCCTGTATGCCGAAGACCCGGCCAACGATTTTTTACCCGCGACCGGCAAATTAGCGCTGTACCGTGAATCGGCACCTGGCGAAGGCCGGCGGGTGGACAGTGGGGTCAGCGAAGGCGATGTGGTGTCGCCGTTCTACGACCCGATGCTGGGCAAGCTGATCGCCTGGGGCGAAGACCGCGAGCAGGCGCGTTTGCGCTTGCTGGCCATGCTCGATGAGTTCGCCATTGGCGGGCTGAAAACCAACATTGCCTTCCTGCGGCGCATTCTCGCCCACCCGGCATTTGCTGCAG  >  NC_002947/4592761‑4593056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.