New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 329807	49 (0.830)	4 (0.070)	4/242	NT	7.8%	coding (164/720 nt)	gltR‑I	two‑component system response regulator
	?	NC_002947	= 329871	49 (0.890)					coding (100/720 nt)	gltR‑I	two‑component system response regulator

GTGGTTCGAAGGGCTTGGCCAGATAGTCGTCGGCGCCTACTTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/329652‑329807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagcaGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGTCAGCCAAGG  <  NC_002947/329871‑329724                                                                                                                                                                                                                                                                                                                  GTGGTTCGAAGGGCTTGGCCAGATAGTCGTCGGCGCCTACTTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCC                                                                                                                                                             >  1:255612/1‑149  TGGTTCGAAGGGCTTGGCCAGATAGTCGTCGGCGCCTACTTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCG                                                                                                                                                            >  8:52349/1‑149        GAAGGGCTTGGCCAGATAGTCGTCGGCGCCTACTTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCA                                                                                                                                                      >  7:310038/1‑149                                         TTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGG                                                                                                                     >  4:56897/1‑149                                                                GCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGAGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCT                                                                                              >  1:72133/1‑149                                                                                  ACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGG                                                                             <  3:56897/148‑1                                                                                  ACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCG                                                                              <  2:72133/147‑1                                                                                                                                                     CGGCAGCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGT           >  3:155764/1‑147                                                                                                                                                          GCAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGTCAGCC      >  4:100341/1‑147                                                                                                                                                           CAGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGTCAGCCAAG   >  6:27426/1‑149                                                                                                                                                            AGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCCGTGATCATGCTGTCAGCCAAGG  <  7:234830/149‑1                                                                                                                                                            AGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGTCAGCCAAGG  >  8:234830/1‑149                                                                                                                                                                                                                                                                                                                  GTGGTTCGAAGGGCTTGGCCAGATAGTCGTCGGCGCCTACTTCCAGACCGATGATGCGGTCCAGCGTGCTGCCCTTGGCTGACAGCATGATCACTGCCAACCCAGGTGTGGCCTGCAACTGCCTGCACAGGCTAAGGCCGTCCTCACCCGGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/329652‑329807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagcaGACGGTCAACAGATGCGTGACCAGCTGGCCCGGCACAAAGTGGAGCTGGTGGTGCTCGACCTGATGCTGCCGGGTGAGGACGGCCTTAGCCTGTGCAGGCAGTTGCAGGCCACACCTGGGTTGGCAGTGATCATGCTGTCAGCCAAGG  <  NC_002947/329871‑329724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.