| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 879400 | 54 (0.920) | 3 (0.050) | 3/246 | NT | 5.9% | coding (929/1683 nt) | PP_0763 | medium‑chain‑fatty acid CoA ligase |
| ? | NC_002947 | = 879456 | 44 (0.780) | coding (985/1683 nt) | PP_0763 | medium‑chain‑fatty acid CoA ligase | |||||
ACCCAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGAGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/879247‑879400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAGTGG < NC_002947/879456‑879311 ACCCAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGAGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATC > 6:23330/1‑149 CCCAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGAGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCG < 3:177776/149‑1 CAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGTGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGC < 2:304542/149‑1 CAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGAGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGC < 7:150365/149‑1 GTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGA < 1:192320/149‑1 GCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGAT > 3:33011/1‑148 GCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGAT < 4:33011/148‑1 CGGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAG < 5:135592/149‑1 GGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAGT < 6:32841/149‑1 GGCGGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAGT < 7:315427/149‑1 GGTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAGTGG > 8:217813/1‑148 ACCCAGGGCGCTACGAGCCGGACATGCTGGTCAAGCTTTGGCGTGAAGAGAAGGTCACTTTCTCCCACTGCGTGCCGACCATCCTGCAGATGCTGCTCAACTGCCCGAACGCCCAGGGGCAGGACTTCGGCGGCTGGAAGATCATCATCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/879247‑879400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggTCAGCTGGATGCCGCGCGCCAGGGCGGCCTGGTACAGCGAACGGTTGAGCGAGCTGCCGCCGATGATGATCTTCCAGCCGCCGAAGTCCTGCCCCTGGGCGTTCGGGCAGTTGAGCAGCATCTGCAGGATGGTCGGCACGCAGTGG < NC_002947/879456‑879311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |