New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	918900 =	60 (1.020)	5 (0.090)	3/246	NT	8.3%	coding (200/1335 nt)	opdC	histidine‑specific outer membrane porin D
	?	NC_002947	918958 =	53 (0.940)					coding (142/1335 nt)	opdC	histidine‑specific outer membrane porin D

TTCAACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/918961‑918900 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggtTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCCATCAGCCTTGTCTTCATCTGCCTGGGCGGCGAAAGGGATCGTTGCAGTCAACGCAATGAAAAGCGGGGTAAAACGAAACGCGGAAGGCACCGGTAC  >  NC_002947/918958‑919105                                                                                                                                                                                                                      TTCAACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGTTGAAGAAGAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCCATCAGCCTTGTCTTCATCTGCCTGGGCGGCGA                                                                  >  1:114918/1‑148     ACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGTTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCC                                                                                                  >  1:233015/1‑110     ACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGTTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCC                                                                                                  >  1:238198/1‑110     ACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGTTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCC                                                                                                  <  2:233015/110‑1     ACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGTTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCC                                                                                                  <  2:238198/110‑1                                                           cgtTTGAAG‑‑TAGGCATTACTAAAAGGCATGTTGAAGTACGAACCTTCTATGAAGCCATCAGCCTTGTCTTCATCTGCCTGGGCGGCGAAAGGGATCGTTGCAGTCAACGCAATGAAAAGCGGGGTAAAACGAAACGCGGAAGGCACCGG     <  7:44995/146‑1                                                              TTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCCATCAGCCTTGTCTTCATCTGCCTGGGCGGCGAAAGGGATCGTTGCAGTCAACGCAATGAAAAGCGGGGTAAAACGAAACGCGGAAGGCACCGGTAC  <  7:98664/149‑1                                                                                                                                                                                                                      TTCAACCGCGACAACCACAACGCCGGCGTGCGCGACACCCGCGAGTGGGGCCAGGGCGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/918961‑918900 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggtTGAAG‑‑TAGGCATTACGAAAATGCAGGTTGAAGGACGAACCTTCGATGAAGCCATCAGCCTTGTCTTCATCTGCCTGGGCGGCGAAAGGGATCGTTGCAGTCAACGCAATGAAAAGCGGGGTAAAACGAAACGCGGAAGGCACCGGTAC  >  NC_002947/918958‑919105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.