New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1102881 =	73 (1.240)	7 (0.130)	5/242	NT	9.1%	intergenic (+20/‑98)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	1102927 =	71 (1.290)					intergenic (+66/‑52)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein

GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1103035‑1102881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggggcTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTG  >  NC_002947/1102927‑1103074                                                                                                                                                                                                                                                                                                                 GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACC                                                                                                                                                             >  8:122789/1‑148   CCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAG‑CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGG                                                                                                                                                         <  6:238759/149‑1    CCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGG                                                                                                                                                         >  2:20761/1‑149       GGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGC                                                                                                                                                      <  1:8383/149‑1                                                                                                            AAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTT                                                 >  3:300606/1‑149                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCG                                             >  5:1266/1‑149                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAA                                                                            <  1:331661/118‑1                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAA                                                                            >  2:331661/1‑118                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCC                                                                                         >  8:48627/1‑105                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCC                                                                                         <  7:48627/105‑1                                                                                                                          CGAAGCCCAACGAAGGCTTCGCTG‑GCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTT                                   >  2:31602/1‑148                                                                                                                                                       GGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAA      <  4:300606/149‑1                                                                                                                                                       GGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAA      >  3:272466/1‑149                                                                                                                                                        GGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAAC     <  1:348315/149‑1                                                                                                                                                        GGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGG                              >  2:199201/1‑124                                                                                                                                                        GGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGG                              <  1:199201/124‑1                                                                                                                                                           CTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTG  <  6:1266/149‑1                                                                                                                                                                                                                                                                                                                 GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1103035‑1102881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggggcTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTG  >  NC_002947/1102927‑1103074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.