New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1134218	43 (0.730)	4 (0.070)	4/246	NT	8.9%	coding (1121/1206 nt)	gltS	glutamate:sodium symporter
	?	NC_002947	= 1134278	41 (0.730)					coding (1061/1206 nt)	gltS	glutamate:sodium symporter

GCAGGCCCCACGCAACTCAGAACGACGTTCTGATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1134065‑1134218 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGTTAAGC  <  NC_002947/1134278‑1134131                                                                                                                                                                                                                                                                                                                GCAGGCCCCACGCAACTCAGAACGACGTTCTGATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCAC                                                                                                                                                           >  5:378434/1‑149                               TGATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATC                                                                                                                                                       <  6:340529/123‑1                               TGATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATC                                                                                                                                                       >  5:340529/1‑123                                GATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGCCAACATGCAGGCGGTGACACAACGC                                                                                                                            >  5:89640/1‑149                                 ATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACC                                                                                                                                                          >  1:92563/1‑118                                 ATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACC                                                                                                                                                          <  2:92563/118‑1                                              GCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCA                                                                                                              >  2:51960/1‑149                                                                           CGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGG                                                                                 <  6:89640/149‑1                                                                                         GCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATC                                                                   <  1:51960/149‑1                                                                                                                                                     CCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGT       >  2:227445/1‑149                                                                                                                                                     CCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACATCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGT       >  2:232717/1‑149                                                                                                                                                     CCATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACATCGCCTGCCTGGTGGTGCCGATGGGGGGGGCGTTGTTCATCGACTTCAGCAATTTCATCTTGATCAAGCTGTACCTGCCATTGCCTGGGTTGTTTGCGGGT       >  8:261171/1‑149                                                                                                                                                      CATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGT       >  2:367458/1‑148                                                                                                                                                       ATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAACGTCATCGTGATCAAG                                        <  4:90516/114‑1                                                                                                                                                       ATCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAACGTCATCGTGATCAAG                                        >  3:90516/1‑114                                                                                                                                                        TCGCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGTTAA    <  7:133272/149‑1                                                                                                                                                          GCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGTTAAGC  <  4:322089/149‑1                                                                                                                                                          GCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGTTAAGC  <  2:128311/149‑1                                                                                                                                                                                                                                                                                                                GCAGGCCCCACGCAACTCAGAACGACGTTCTGATTGCTTGCCCTGGCTTCACAGGTTCGTGACCTCGCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1134065‑1134218 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgCCAACATGCAGGCGGTGACACAACGCTATGGGGCCTCGCACCTCGCCTTCCTGGTGGTGCCGATGGTGGGGGCGTTCTTCATCGACATCATCAATGTCATCGTGATCAAGCTGTACCTGGCATTGCCTTGGTTTGTTGCGGGTTAAGC  <  NC_002947/1134278‑1134131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.