New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1134218 | 43 (0.730) | 4 (0.070) | 4/246 | NT | 8.9% | coding (1121/1206 nt) | gltS | glutamate:sodium symporter |
? | NC_002947 | = 1134278 | 41 (0.730) | coding (1061/1206 nt) | gltS | glutamate:sodium symporter |
GCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGTAAAG > NC_002947/1134131‑1134424 | gCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGc < 4:322089‑M2/149‑2 (MQ=255) gCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGc < 2:128311‑M2/149‑2 (MQ=255) ttAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcga < 7:133272‑M2/149‑4 (MQ=255) aCCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGATGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatgg > 2:232717‑M2/1‑143 (MQ=255) aCCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatgg > 2:227445‑M2/1‑143 (MQ=255) aCCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatg > 2:367458‑M2/1‑143 (MQ=255) aCCCGCAAACAACCCAGGCAATGGCAGGTACAGCTTGATCAAGATGAAATTGCTGAAGTCGATGAACAACGCCCCCCCCATCGGCACCACCAGGCAGGCGATGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatgg > 8:261171‑M2/1‑143 (MQ=255) caacaaACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTc < 4:367653/149‑1 (MQ=255) cAAGGCAATGCCAGGTACAGCTTGATAACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGc < 8:133272/149‑1 (MQ=255) cAAGGCAATGCCAGCTACAGCTTGATCACGATGACAATGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAg > 2:264724/1‑148 (MQ=255) gCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAg > 3:83978/1‑149 (MQ=255) cTTGATCACGATGACGTTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgat > 3:90516‑M2/1‑110 (MQ=255) cTTGATCACGATGACGTTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgat < 4:90516‑M2/114‑5 (MQ=255) aTCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTg > 5:267418/1‑146 (MQ=255) aTCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTg < 6:267418/146‑1 (MQ=255) aTCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGcc > 2:96861/1‑149 (MQ=255) aTCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGcc > 2:327642/1‑149 (MQ=255) tCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCg < 1:128311/149‑1 (MQ=255) gATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAg > 8:2757/1‑149 (MQ=255) gatgatGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGActg > 5:2237/1‑149 (MQ=255) atgatgTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGActgc < 1:327642/149‑1 (MQ=255) atgatgTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGActg < 6:378434/148‑1 (MQ=255) tgatgTCGATGAAGAACGCCCCCACCATCGGCACCTCCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCCCAGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCTG‑AAGCCACAGTGGCCGGCAGCCAGGActgct > 7:307263/1‑149 (MQ=255) tgatgTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGActgct < 1:264724/149‑1 (MQ=255) gatgTCGATGAAGAACGCCCCCACCATCGGCACCACCAGTAAGGCGAGGTGAGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCAACAGTGGCCGGCAGCCAGGActgctg > 2:177768/1‑149 (MQ=255) tgTCGATGAAGAACGCCCCCACCATCGGCAACACCAGGAAGGCGAAGTGCGAGGCCCCATAGCGTTATGTCACCGCATGCATGTTGGCGATGGCTGTCGGTGTAGCACCAAGGCCG‑AAGCCACAGTGGCCGGAAGCCAGGActgctgaa > 7:235748/1‑147 (MQ=255) gATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatggtgggggcgttcttcatcgacatcatcaatgtcatcgtgatcaagctgtacctggcattgc < 1:51960‑M2/149‑67 (MQ=255) tGAAGAACGCCCCCACCATCGGCCCCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAg > 5:309909/1‑149 (MQ=255) gaagaaCGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑CAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGt > 6:185682/1‑149 (MQ=255) agaaCGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGtt < 6:2237/148‑1 (MQ=255) gaaCGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTgc < 3:322089/149‑1 (MQ=255) cccccACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGccc > 5:63027/1‑148 (MQ=255) ccaccaTCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatggtgggggcgttcttcatcgacatcatcaatgtcatcgtgatcaagctgtacctggcattgccttggtttgttgcg < 6:89640‑M2/149‑81 (MQ=255) ccaTCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCGCAAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTAc < 1:96861/149‑1 (MQ=255) tCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCtt > 1:320705/1‑148 (MQ=255) ggCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGaa < 7:2757/149‑1 (MQ=255) gCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGatc > 1:367267/1‑147 (MQ=255) aGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGAtt > 4:103086/1‑149 (MQ=255) ggCGACGTGCGAGGACCCATAGCGTTGTGTCACCGCCTGCATGTTGGCCATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTg > 6:335378/1‑149 (MQ=255) gCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGc < 6:309909/149‑1 (MQ=255) tGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGcgatggtgggggcgttcttcatcgacatcatcaatgtcatcgtgatcaagctgtacctggcattgccttggtttgttgcgggttaagcgaggtcacgaacctgtgaagc > 2:51960‑M2/1‑40 (MQ=255) cccATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGa > 5:145261/1‑149 (MQ=255) gCGTTGTGTCACCGCCTGCATGTTGGcgatggtgggggcgttcttcatcgacatcatcaatgtcatcgtgatcaagctgtacctggcattgccttggtttgttgcgggttaagcgaggtcacgaacctgtgaagccagggcaagcaatc > 5:89640‑M2/1‑26 (MQ=255) gTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTc > 2:167102/1‑149 (MQ=255) cgtCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTACCACCCAGGCTG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCtgt < 8:307263/147‑1 (MQ=255) gtCACTGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGc > 1:256784/1‑149 (MQ=255) tCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCa < 7:9512/138‑1 (MQ=255) tCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCa > 8:9512/1‑138 (MQ=255) tCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGc < 1:177768/148‑1 (MQ=255) tCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCg > 7:138187/1‑149 (MQ=255) ccGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGc > 2:188670/1‑148 (MQ=255) gCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCcaa < 1:188670/149‑1 (MQ=255) cTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCcaac > 1:320674/1‑148 (MQ=255) aTGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGt < 6:63027/149‑1 (MQ=255) tGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGt > 2:266494/1‑148 (MQ=255) ttGGCGATGGCTGTCGGTGTAGCACACAGGCCG‑AAGCCACAGTGGCCGGAAGCAAGGACTGCTGCATCGTAGTTTCGCGACATTTCCTTGAACTTCACGAAGATTg > 3:35546/1‑106 (MQ=255) tGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGTGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGTa > 3:48787/1‑146 (MQ=255) gCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGTAaag > 3:290817/1‑147 (MQ=255) | GCTTAACCCGCAACAAACCAAGGCAATGCCAGGTACAGCTTGATCACGATGACATTGATGATGTCGATGAAGAACGCCCCCACCATCGGCACCACCAGGAAGGCGAGGTGCGAGGCCCCATAGCGTTGTGTCACCGCCTGCATGTTGGCGATGGCTGTCGGTGTAGCACCCAGGCCG‑AAGCCACAGTGGCCGGCAGCCAGGACTGCTGCATCGTAGTTGCGCCCCATTACCTTGAACGTCACGAAGATTGCGAACAGCGCCATGACCAGTGTCTGTGCGGCCAACAAGGTAAAG > NC_002947/1134131‑1134424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |