New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1160293	43 (0.730)	4 (0.070)	3/238	NT	8.1%	coding (105/846 nt)	gtsC	mannose/glucose ABC transporter permease
	?	NC_002947	= 1160322	51 (0.940)					coding (134/846 nt)	gtsC	mannose/glucose ABC transporter permease

AATCCTGGCGATCCTCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1160136‑1160293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggtgatgTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGTCGACAGGACTATGCATGGCGTTTGCTC  <  NC_002947/1160322‑1160178                                                                                                                                                                                                                                                                                                                 AATCCTGGCGATCCTCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTG                                                                                                                                                            <  2:86903/149‑1     CTGGCGATCCTCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTG                                                                                                                                                         <  6:335879/148‑1     CTGGCGATCCTCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTG                                                                                                                                                         <  7:200726/148‑1               TCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATGTCTTC                                                                                                                                              >  4:274923/1‑149                                              CAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCAC                                                                                                                >  4:186575/1‑148                                                  CGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCA                                                                                                           <  3:274923/149‑1                                                    CCATGCATAGTCCTGTCGACAAGCCCGTGCGCTGCCGCCGCCTCATGGCCAGCCAGGCCGTGTTGCTGAGGGGCGTGCTGCTGTATCTTGTGCCGCTGGTGGTGATGGCTTCGGGGGGCTTGAAGCTGGTCAGCAGCATCACCACCAGC                                                                                                         <  5:313650/149‑1                                                    CCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGC                                                                                                         <  3:186575/149‑1                                                     CATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGG                                                                                                                                                           <  7:248561/98‑1                                                     CATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGG                                                                                                                                                           >  8:248561/1‑98                                                                                                                                                     GGTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGT                             <  3:145161/128‑1                                                                                                                                                     GGTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGT                             >  4:145161/1‑128                                                                                                                                                      GTGGTGATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGTCGACAGGACTATGCATGGCGTT       >  6:343470/1‑149                                                                                                                                                           GATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGTCGACAGGACTATGCATGGCGTTTGCTC  >  1:29638/1‑149                                                                                                                                                           GATGTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGTCGACAGGACTATGCATGGCGTTTGCTC  >  3:111539/1‑149                                                                                                                                                                                                                                                                                                                 AATCCTGGCGATCCTCGTGCCTTACCTGTACTCGGAGCTGCGGAGCAAACGCCATGCATAGTCCTGTCGACAAGCCAGTGCTCAGCCTCAGCCGCATGGCCATCCATGCCGTGTTGCTGATCGCCGTGCTGCTGTATCTGGTGCCGCTGGTGGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1160136‑1160293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggtgatgTCTTCGGGGGTCTTGAAGCTGGTCAGCAGCATCACCACCAGCGGCACCAGATACAGCAGCACGGCGATCAGCAACACGGCATGGATGGCCATGCGGCTGAGGCTGAGCACTGGCTTGTCGACAGGACTATGCATGGCGTTTGCTC  <  NC_002947/1160322‑1160178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.