New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1306231	53 (0.900)	3 (0.050)	3/244	NT	5.4%	coding (86/924 nt)	livH	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 1306264	54 (0.970)					coding (53/924 nt)	livH	branched‑chain amino acid ABC transporter permease

ATCGTCGCGACGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1306078‑1306231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcgGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGCCTGGCCATGATGGGTATCCATT  <  NC_002947/1306264‑1306118                                                                                                                                                                                                                                                                                                               ATCGTCGCGACGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACAC                                                                                                                                                          >  5:229530/1‑149    GTCGCGACGAAGGCTACGGTCATCAGGATCGGCAGCGATTGGATAGCCATCATGGCCATGCCCGCCAGGGCTATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATTCCAATGATGCGGTACACCA                                                                                                                                                        <  2:346474/148‑1     TCGCGACGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATC                                                                                                                                                      <  3:81556/149‑1                                                 CCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTA                                                                                                          <  6:229530/149‑1                                                  CCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATG                                                                                                               <  7:125006/143‑1                                                  CCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATG                                                                                                               >  8:125006/1‑143                                                    ATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATC                                                                                                                                                      >  1:138983/1‑102                                                    ATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATC                                                                                                                                                      <  2:138983/102‑1                                                                                                                                                      CATCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGCCTGGCCATGATGGGTATC      >  1:246863/1‑148                                                                                                                                                        TCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGCCTGGCCATGATGGGTATCCAT   >  4:320432/1‑149                                                                                                                                                        TCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGC                        <  5:4743/128‑1                                                                                                                                                        TCGGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGC                        >  6:4743/1‑128                                                                                                                                                          GGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGCCTGGCCATGATGGGTATCCATT  <  2:315901/148‑1                                                                                                                                                                                                                                                                                                               ATCGTCGCGACGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1306078‑1306231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcgGCAGCACCTATGCCTTGATCGCCATCGGCTACACGATGGTGTACGGCATCATTGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCGGTTCCTACGTGGCCTTCATCGCCCTGGCGGGCCTGGCCATGATGGGTATCCATT  <  NC_002947/1306264‑1306118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.