New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1306231	53 (0.900)	3 (0.050)	3/244	NT	5.4%	coding (86/924 nt)	livH	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 1306264	54 (0.970)					coding (53/924 nt)	livH	branched‑chain amino acid ABC transporter permease

CGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGG  >  NC_002947/1306088‑1306379                                                                                                                                                |                                                                                                                                                     cgaAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCAAGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAGGTTGATCATGCCAATGATGCCGTACACCATCGTGTAg                                                                                                                                                 <  6:369696/149‑1 (MQ=255)         aCGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGc                                                                                                                                         >  6:212562/1‑149 (MQ=255)             tcataaGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGAt                                                                                                                                      >  3:320432/1‑148 (MQ=255)               atcaGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATc                                                                                                                                     >  4:311248/1‑147 (MQ=255)                  aGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAgg                                                                                                                                 <  3:311248/148‑1 (MQ=255)                     aTCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATa                                                                                                                             <  2:276168/149‑1 (MQ=255)                               aaTGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCc                                                                                                                    <  2:315901‑M2/148‑2 (MQ=255)                                aTGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcga                                                                                                                  >  4:320432‑M2/1‑146 (MQ=255)                                   gATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcgatg                                                                                                                >  1:246863‑M2/1‑143 (MQ=255)                                       cccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGgcagcacctatgccttgatcgccatcggctacacgatggtgta                                                                                                           <  6:229530‑M1/149‑44 (MQ=255)                                        ccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGgcagcacctatgccttgatcgccatcggctacacgatg                                                                                                                >  8:125006‑M1/1‑105 (MQ=255)                                        ccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGgcagcacctatgccttgatcgccatcggctacacgatg                                                                                                                <  7:125006‑M1/143‑39 (MQ=255)                                        ccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGtgc                                                                                                                        >  2:200203/1‑135 (MQ=255)                                        ccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGtgc                                                                                                                        <  1:200203/135‑1 (MQ=255)                                        ccATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAAt                                                                                                          >  7:190541/1‑149 (MQ=255)                                         catcatGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATc                                                                                                         <  1:13867/149‑1 (MQ=255)                                          atcatGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCAt                                                                                                                              <  1:169976/127‑1 (MQ=255)                                          atcatGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCAt                                                                                                                              >  2:169976/1‑127 (MQ=255)                                          atcatGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATc                                                                                                         >  3:152027/1‑148 (MQ=255)                                              tGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCAtt                                                                                                     <  1:315901/148‑1 (MQ=255)                                                gCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAAc                                                                                                  >  6:343520/1‑149 (MQ=255)                                                  cAGGCCCGCCAGGGCGATGAAGGCCCCGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTCAc                                                                                                  >  7:130231/1‑147 (MQ=255)                                                  cAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCa                                                                                                <  4:152027/149‑1 (MQ=255)                                                    ggCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAgt                                                                                              >  7:261137/1‑149 (MQ=255)                                                     gCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcga                                                                                                                  >  6:4743‑M2/1‑125 (MQ=255)                                                     gCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcga                                                                                                                  <  5:4743‑M2/128‑4 (MQ=255)                                                       ccGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAgttgt                                                                                           <  8:190541/149‑1 (MQ=255)                                                         gCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGttgttg                                                                                         <  7:240062/149‑1 (MQ=255)                                                                cGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGaaa                                                                                  <  3:64583/149‑1 (MQ=255)                                                                 gATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAAt                                                                                 >  4:40644/1‑149 (MQ=255)                                                                   tGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATgg                                                                               >  2:348078/1‑149 (MQ=255)                                                                      aGGCGAGGTAGGAACCGATCATGTAGACGTCGCCGTTGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCTTAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTTGAAGAAATTGTa                                                                             <  8:130231/148‑1 (MQ=255)                                                                             gTAGGACCCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAg                                                                     <  6:31672/149‑1 (MQ=255)                                                                             gTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAg                                                                     >  2:173591/1‑149 (MQ=255)                                                                             gTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAg                                                                     >  7:147651/1‑149 (MQ=255)                                                                                      gATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAGATGGTAGATCTCAGGCATTa                                                               >  8:110041/1‑146 (MQ=255)                                                                                      gATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAGATGGTAGATCTCAGGCATTACa                                                             <  7:110041/148‑1 (MQ=255)                                                                                      gATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAg                                                            >  5:30056/1‑149 (MQ=255)                                                                                      gATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAg                                                            >  7:226088/1‑149 (MQ=255)                                                                                       aTCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAgc                                                           >  1:50463/1‑149 (MQ=255)                                                                                          aTGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCt                                                        >  3:361381/1‑149 (MQ=255)                                                                                           tGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTc                                                       >  7:9942/1‑149 (MQ=255)                                                                                            gTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTc                                                       >  6:314515/1‑148 (MQ=255)                                                                                             tACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCt                                                     <  8:147651/149‑1 (MQ=255)                                                                                               cacCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTa                                                    >  1:351187/1‑148 (MQ=255)                                                                                                  cTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTaaaaa                                                <  3:40644/149‑1 (MQ=255)                                                                                                   tCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTaaaacc                                               >  8:300379/1‑147 (MQ=255)                                                                                                              gAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATc                                                                                                         >  6:286650/1‑80 (MQ=255)                                                                                                              gAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATc                                                                                                         <  5:286650/80‑1 (MQ=255)                                                                                                                aGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCTATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCAttt                                  <  5:314515/149‑1 (MQ=255)                                                                                                                 gTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAAGCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCAttt                                  <  4:293036/148‑1 (MQ=255)                                                                                                                 gTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCAttt                                  >  6:170750/1‑148 (MQ=255)                                                                                                                   tGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCa                                <  8:9942/148‑1 (MQ=255)                                                                                                                     aTCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTg                             >  8:244736/1‑149 (MQ=255)                                                                                                                     aTCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTg                             >  3:233302/1‑149 (MQ=255)                                                                                                                      tCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTgg                            >  5:145776/1‑149 (MQ=255)                                                                                                                      tCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTg                             <  4:233302/148‑1 (MQ=255)                                                                                                                         tGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAg                         <  5:212562/149‑1 (MQ=255)                                                                                                                         tGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAg                         <  8:226088/149‑1 (MQ=255)                                                                                                                           ccAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAggg                       <  6:30056/149‑1 (MQ=255)                                                                                                                            cAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAACGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTTGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAgggg                      <  6:371310/149‑1 (MQ=255)                                                                                                                               tgatgCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTAc                   <  2:50463/149‑1 (MQ=255)                                                                                                                                       tACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatggg           <  6:229530‑M2/149‑107 (MQ=255)                                                                                                                                            cATCGgcagcacctatgccttgatcgccatcggctacacgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatgggtatc       >  1:246863‑M1/1‑5 (MQ=255)                                                                                                                                            cATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatgg            <  7:125006‑M2/143‑106 (MQ=255)                                                                                                                                            cATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCcgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatgg            >  8:125006‑M2/1‑38 (MQ=255)                                                                                                                                            cATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACcg      >  7:30004/1‑149 (MQ=255)                                                                                                                                             aTCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACcgc     >  5:118009/1‑149 (MQ=255)                                                                                                                                              tCGgcagcacctatgccttgatcgccatcggctacacgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatgggtatccat    >  4:320432‑M1/1‑3 (MQ=255)                                                                                                                                              tCGgcagcacctatgccttgatcgccatcggctacacgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggc                         <  5:4743‑M1/128‑126 (MQ=255)                                                                                                                                              tCGgcagcacctatgccttgatcgccatcggctacacgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggc                         >  6:4743‑M1/1‑3 (MQ=255)                                                                                                                                              tCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACcgcg    <  5:170750/149‑1 (MQ=255)                                                                                                                                                gtgtAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCggg  <  8:261137/149‑1 (MQ=255)                                                                                                                                                gtgtAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCgg   <  2:351187/148‑1 (MQ=255)                                                                                                                                                ggcagcacctatgccttgatcgccatcggctacacgatggtgtacggcatcattggcatgatcaacttcgcccacggcgaggtgtacatgatcggttcctacgtggccttcatcgccctggcgggcctggccatgatgggtatccatt   <  2:315901‑M1/148‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                     CGAAGGCGACGGTCATCAGGATCGGCAGCGAATGGATACCCATCATGGCCAGGCCCGCCAGGGCGATGAAGGCCACGTAGGAACCGATCATGTACACCTCGCCGTGGGCGAAGTTGATCATGCCAATGATGCCGTACACCATCGTGTAGCCGATGGCGATCAAGGCATAGGTGCTGCCGATGGTCAATCCATTAACCAGTTGTTGGAAGAAATGGTAGATCTCAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGG  >  NC_002947/1306088‑1306379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.