| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1437847 = | 32 (0.540) | 3 (0.050) | 3/248 | NT | 6.3% | coding (186/927 nt) | prpA | 4‑hydroxyproline epimerase |
| ? | NC_002947 | 1437921 = | 59 (1.040) | coding (112/927 nt) | prpA | 4‑hydroxyproline epimerase | |||||
GTGGCGAACCAACCCGCCTGGTGATGAAGGGCTTTCCGCAACTGCGGGGCCGAAGCATGGCCGAACAGCGCGACGAACTGCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1437998‑1437847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGCCACCCGTGTGGGAGTCGATGACGTGAATCTGTTTCATGGGCTTGTCCCTTGCGTAAAAGATCAGGAAGC > NC_002947/1437921‑1438064 GTGGCGAACCAACCCGCCTGGTGATGAAGGGCTTTCCGCAACTGCGGGGCCGAAGCATGGCCGAACAGCGCGACGAACTGCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGC < 5:1331/149‑1GTGGCGAACCAACCCGCCTGGTGATGAAGGGCTTTCCGAAACTGCGGGTCCGAAGCATGGCCGAACAGCGCGACGAACTGCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGC < 6:97758/149‑1 AACTGCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTT > 5:83350/1‑149 GCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGC > 4:165420/1‑148 GAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGCCACCC < 3:165420/149‑1 GCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGCCACCCGTGTGGGAGTCGATGACGTGAATCTGTTTCATGGGCTTGTCCCTTGCGTAAAAGATCAGGAAGC > 2:22473/1‑149 GCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGCCACCCGTGTGGGAGTCGATGACGTGAATCTGTTTCATGGGCTTGTCCCTTGCGTAAAAGATCAGGAAGC > 4:309965/1‑149 GTGGCGAACCAACCCGCCTGGTGATGAAGGGCTTTCCGCAACTGCGGGGCCGAAGCATGGCCGAACAGCGCGACGAACTGCGCGAACTGCACGACCGGTGGCGCCGCGCCTGCCTGCTGGAGCCACGCGGCAACGATGTGCTGGTTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1437998‑1437847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCGCCACCCGTGTGGGAGTCGATGACGTGAATCTGTTTCATGGGCTTGTCCCTTGCGTAAAAGATCAGGAAGC > NC_002947/1437921‑1438064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |