New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1437847 =	32 (0.540)	3 (0.050)	3/248	NT	6.3%	coding (186/927 nt)	prpA	4‑hydroxyproline epimerase
	?	NC_002947	1437921 =	59 (1.040)					coding (112/927 nt)	prpA	4‑hydroxyproline epimerase

GTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCG  >  NC_002947/1437703‑1437994                                                                                                                                                 |                                                                                                                                                    gcttcctgatcttttacgcaagggacaagcccatgaaacagattcacgtcatcgactcccacacgggtggcgaaccaacccgcctggtgatgaagggctttccgcaactgcggggccgaagcatggccgaacagcgcgacgaacTgcgc                                                                                                                                                 >  4:309965‑M1/145‑149 (MQ=255) gcttcctgatcttttacgcaagggacaagcccatgaaacagattcacgtcatcgactcccacacgggtggcgaaccaacccgcctggtgatgaagggctttccgcaactgcggggccgaagcatggccgaacagcgcgacgaacTgcgc                                                                                                                                                 >  2:22473‑M1/145‑149 (MQ=255)   gCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGcc                                                                                                                                                >  3:249186/1‑148 (MQ=255)     aCCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAAc                                                                                                                                             >  7:212089/1‑149 (MQ=255)                  tCAGGCCCATGTGCTGTAGCGAGGCGCCCAGGCCGATGGTGCCGTGGCCGCACAAGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCACCCAGCACATCGTTg                                                                                                                                >  2:362226/1‑149 (MQ=255)                            gtgCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCt                                                                                                                      >  2:62221/1‑149 (MQ=255)                                      gAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAgcagg                                                                                                              >  5:187995/1‑147 (MQ=255)                                         gCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCaggcaggc                                                                                                         >  1:310213/1‑149 (MQ=255)                                           gACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgc                                                                                                       >  7:321218/1‑149 (MQ=255)                                             ccAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgcgg                                                                                                     <  5:216187/149‑1 (MQ=255)                                                 gCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAggcgcgaactg                                                                                                 >  6:17864/1‑144 (MQ=255)                                                      tGGTACCTTGGCCGCACATGTTCAGGTAACCCGCGTAGTTGAAGAAGATCACCCCTCACGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCTCGTGGCTCCACCAGGCAGGCGCGGCGCCAccc                                                                                             >  2:83119/1‑147 (MQ=255)                                                           ccGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGt                                                                                        <  2:310213/148‑1 (MQ=255)                                                                 gggtggcgaaccaacccgcctggtgatgaagggctttccgcaactgcggggccgaagcatggccgaacagcgcgacgaacTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTc                                                                                 <  3:165420‑M1/69‑1 (MQ=255)                                                                    cacaTGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTcgcg                                                                              <  1:62221/149‑1 (MQ=255)                                                                      gcgaaccaacccgcctggtgatgaagggctttccgcaactgcggggccgaagcatggccgaacagcgcgacgaacTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCgcgc                                                                             >  4:165420‑M1/76‑148 (MQ=255)                                                                       aTGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAg                                                                           >  2:245122/1‑149 (MQ=255)                                                                         aaccaacccgcctggtgatgaagggctttccgcaactgcggggccgaagcatggccgaacagcgcgacgaacTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGtt                                                                         >  5:83350‑M1/73‑149 (MQ=255)                                                                             aGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTtcgtc                                                                     >  3:303689/1‑149 (MQ=255)                                                                              ggTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTtcgtcg                                                                    >  3:279932/1‑149 (MQ=255)                                                                                    cGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGt                                                              <  4:249186/149‑1 (MQ=255)                                                                                        gttgttGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCgg                                                          <  1:57504/149‑1 (MQ=255)                                                                                              gaagaaGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCCCGCAGTTCGTCGCGCTGTTCGGCCATGc                                                    >  2:324021/1‑149 (MQ=255)                                                                                                agaagaTCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCt                                                   <  8:321218/148‑1 (MQ=255)                                                                                                 gaagaTCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGGCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGAGCAGTTCGTCGCGCTGTTCGGCCATGCTTc                                                 <  1:362226/149‑1 (MQ=255)                                                                                                    gaTCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGc                                              >  3:271584/1‑149 (MQ=255)                                                                                                          cccGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGc                                                                                                                               <  1:152118/62‑1 (MQ=255)                                                                                                          cccGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCg                                          >  8:335949/1‑147 (MQ=255)                                                                                                          cccGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCg                                          >  8:191284/1‑147 (MQ=255)                                                                                                              cAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTg                                    <  1:245122/149‑1 (MQ=255)                                                                                                               cggTGGCGACGCCCGACACTGCCGCGCAGTACAGTGCGCCAACCCGCACATCGTTGCCGCGGGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGGCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGc                                   <  4:217061/148‑1 (MQ=255)                                                                                                                     ccgcccccGACCCTGGCCGGCAGTACCCGGCCCCACCCCCCCCCTCGGTGCCGCGTGGCTCCAGCAGCCCGGCGCGGCGCCACCGGTCGTGCAGATCGCGCAGATCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAg                             <  4:271584/143‑1 (MQ=255)                                                                                                                          gCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCAGCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCtt                        <  1:83119/149‑1 (MQ=255)                                                                                                                           ccGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCtt                        >  5:43895/1‑148 (MQ=255)                                                                                                                            cGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTtca                      >  6:76906/1‑149 (MQ=255)                                                                                                                            cGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCCTGCAGTTCGAGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTtca                      >  4:31171/1‑149 (MQ=255)                                                                                                                                           gTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGggttg       <  4:279932/149‑1 (MQ=255)                                                                                                                                            tACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGggttgg      >  7:85321/1‑149 (MQ=255)                                                                                                                                              cAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGggttggt     <  6:43895/148‑1 (MQ=255)                                                                                                                                              cAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGggttggt     <  1:324021/148‑1 (MQ=255)                                                                                                                                               aGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCTCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTc   <  5:76906/149‑1 (MQ=255)                                                                                                                                               aGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTc   <  2:307681/149‑1 (MQ=255)                                                                                                                                                gTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCt                         >  2:213689/1‑126 (MQ=255)                                                                                                                                                gTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCt                         <  1:213689/126‑1 (MQ=255)                                                                                                                                                gTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCg  <  7:335949/149‑1 (MQ=255)                                                                                                                                                gTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCg  >  5:69856/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GTGCACCCCGGGCGTGATCAGGCCCATGTGCTGTAGCGAGGCGACCAGGCCGATGGTGCCGTGGCCGCACATGTTCAGGTAACCGGCGTTGTTGAAGAAGATCACCCCGCAGGTGGCGTCGGCCGACACTGGCGGGCAGTACAGTGCGCCAACCAGCACATCGTTGCCGCGTGGCTCCAGCAGGCAGGCGCGGCGCCACCGGTCGTGCAGTTCGCGCAGTTCGTCGCGCTGTTCGGCCATGCTTCGGCCCCGCAGTTGCGGAAAGCCCTTCATCACCAGGCGGGTTGGTTCG  >  NC_002947/1437703‑1437994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.