New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1521400 =	51 (0.870)	5 (0.090)	4/248	NT	9.3%	coding (657/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	1521439 =	49 (0.870)					coding (696/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

GCATGGACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1521442‑1521400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTG  >  NC_002947/1521439‑1521548                                                                                                                                                           GCATGGACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGC                                                                  <  7:101134/89‑1 GCATGGACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGC                                                                  >  8:101134/1‑89      GACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTTGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTG  >  4:317785/1‑148      GACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGA                            >  5:153135/1‑122      GACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGA                            <  6:153135/122‑1                                                                                                                                                           GCATGGACGGCCTTCCACCGGCAGCGGCCGGCTCAGGGCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1521442‑1521400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTG  >  NC_002947/1521439‑1521548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.