New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 169431168 (1.160)4 (0.070) 3/248 NT 5.7% coding (277/1275 nt) wspC biofilm formation methyltransferase WspC
?NC_002947 = 1694333 66 (1.170)coding (299/1275 nt) wspC biofilm formation methyltransferase WspC

TGGACGATTACTGGCTGCGCCTGCAGCAATCGGCAGATGAGCAACAGGCGCTGATCGAAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1694159‑1694311
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAAGGATTCGGGGTAACGGAAAAACCAGGTTTCCGGGACGATCACCGCTTCGATCAGCGCCTGTTGCTCATCTGCC  <  NC_002947/1694333‑1694190
                                                                                                                                                                                                                                                                                                         
TGGACGATTACTGGCTGCGCCTGCAGCAATCGGCAGATGAGCAACAGGCGCTGATCGAAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTG                                                                                                                                                      >  2:139446/1‑149
                                  AGATGAGCAACAGGCGCTGATCGAAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGACTCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGT                                                                                                                    <  5:354875/149‑1
                                  AGATGAGCAACAGGCGCTGATCGAAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGT                                                                                                                    <  1:139446/149‑1
                                                         AAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATGCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTGAGCAGTCGCAGCGGGCGCGCGCCAGCCAGTT                                                                                                                   >  1:262624/1‑127
                                                         AAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTGAGCAGTCGCAGCGGGCGCGCGCCAGCCAGTT                                                                                                                   <  2:262624/127‑1
                                                                                                                                                    GGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAAGGATTCGGGGTAACGGAAAAACCAGGTTTCCGGGACGATCACCGCTTCGATCAGCGCCTGTTGCTCATCTGCC  <  2:103939/149‑1
                                                                                                                                                    GGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAAGGATTCGGGGTAACGGAAAAACCAGGTTTCCGGGACGATCACCGCTTCGATCAGCGCCTGTTGCTCATCTGCC  <  2:216022/149‑1
                                                                                                                                                    GGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAA                                                                           <  5:97991/76‑1
                                                                                                                                                    GGCTGAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAA                                                                           >  6:97991/1‑76
                                                                                                                                                                                                                                                                                                         
TGGACGATTACTGGCTGCGCCTGCAGCAATCGGCAGATGAGCAACAGGCGCTGATCGAAGCGGTGATCGTCCCGGAAACCTGGTTTTTCCGTTACCCCGAATCCTTCACTGCGCTGGCCAGCCTGGCCCATAAACGGCTGGCTCAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1694159‑1694311
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgAGCAATCGCAGCGGGCGCGCGCCAGCCAGTTGAGCCAGCCGTTTATGGGCCAGGCTGGCCAGCGCAGTGAAGGATTCGGGGTAACGGAAAAACCAGGTTTCCGGGACGATCACCGCTTCGATCAGCGCCTGTTGCTCATCTGCC  <  NC_002947/1694333‑1694190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.